Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0466 ATGGGGGGCTCTGGGAAATGGATGAAGGTTCTTTTAGGACACAGGAAGTCTGATAAGGAAGACAATGAGAAGTTGGGGAGTAAAACTAAGAAATGGAGGCTATGGAGGAGCCCTTCAGGGGATTTGAGCTCTGCTTGGAAGGCTTATAAAGGGGCACATAGAGCAGCTTCTGAAGGCTCTGATTCTCCTCGAGCCGCTGATTCTTTTACCGCCGCTGTCGCCACCGTCCTCCGTGCTCAGCCGAAAGATTTCAGGGTTGTCCGCCAAGAATGGGCTGCAATTCGAATCCAAACTGCATTTCGTGGTTTCTTGTCTAGGAGGGCTCTTAAGGCCTTGAAGGGAGTGGTGAGGCTTCAGGCTCTGGTTAGAGGTCGTTTGGTGAGAAAGCAGGCAGCTGTTACACTGAGGTGCATGCAGGCTCTGGTTCGAGTTCAAGCTCGAGTCAGGGCGCGTCGTGTGAGGATGTCGGTCGAAGGGCAGGCCGTGCAGCAATTGCTTAATGAACATCGCAGCAAGGCTGATCTCTTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATCAAAGCTAAGTTACAAATGAGGCAAGATGGAGCATTTAAGAGGGAGAGAGCAATTGCATACTCTCTTGTTCAAAAGCAATTGAAGGCAATACCAAGCTCATCTTCACGAACAAACGCTTCAATTTACGCTCTTAAGAATTATGAGTTTGACAAGAACAACTGGGGATGGAGTTGGTTGGAGAGATGGATGGCAGCAAAGCCATGGGAGACGAGGTTGATGGAACAATCTCGCACCGATTCCTTTGAGGTCACTCCACCTTCAAAGAGCTGTACAGAGTCTGTTGTGTCTAAACATTCCAAATGTTCTGAACCAAGTTTGGTGAAAGTTAGGAAGAACAATGTATCAACTAGAATTTCTGCTAAACCTCCCTCAAGTGGGCAAGCTCGCTCTTGTTCTAGCCCAAGTTCTGATTTCTGGTATGATGAGAGCTCTGCTTCATCTTCAATCTGCACGTCAACAACTCCCGTGTCGGGGCATGCTTTCTCAACCATAGAAAGAACAGAGAATTGCAATTACAGTAGGCCTAGTTATATGAACCTTACAGAGTCGACAAAGGCAAAGCAGAAAACAAATAGTCACTTATCGCATAGAGTTCAAAGGCAGTCCATGGATGAGTATCAATTCCTTCAGAAATCAGCAGCTTTCTCAAATGCAGATTCTAAGAGTAGTGCTGGCTCTGATTCATCAGTCAACCCCTTTAAGCCATTAATGCTGCCAACACGATCGGATAAGAATGGAACAAAGCTAAGGTCATGA 1335 46.52 MGGSGKWMKVLLGHRKSDKEDNEKLGSKTKKWRLWRSPSGDLSSAWKAYKGAHRAASEGSDSPRAADSFTAAVATVLRAQPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADLLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSLVQKQLKAIPSSSSRTNASIYALKNYEFDKNNWGWSWLERWMAAKPWETRLMEQSRTDSFEVTPPSKSCTESVVSKHSKCSEPSLVKVRKNNVSTRISAKPPSSGQARSCSSPSSDFWYDESSASSSICTSTTPVSGHAFSTIERTENCNYSRPSYMNLTESTKAKQKTNSHLSHRVQRQSMDEYQFLQKSAAFSNADSKSSAGSDSSVNPFKPLMLPTRSDKNGTKLRS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3405215 3407175 - Lag0037104.1 Lac2g0466 597730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0466 444 MobiDBLite consensus disorder prediction 410 428 - -
Lac2g0466 444 MobiDBLite consensus disorder prediction 410 444 - -
Lac2g0466 444 PANTHER IQ-DOMAIN 5-RELATED 6 397 - -
Lac2g0466 444 ProSiteProfiles IQ motif profile. 113 140 - -
Lac2g0466 444 ProSiteProfiles IQ motif profile. 89 117 - -
Lac2g0466 444 MobiDBLite consensus disorder prediction 376 396 - -
Lac2g0466 444 Gene3D - 90 131 - -
Lac2g0466 444 SMART iq_5 111 132 IPR000048 GO:0005515(InterPro)
Lac2g0466 444 SMART iq_5 88 110 IPR000048 GO:0005515(InterPro)
Lac2g0466 444 FunFam IQ-domain 11 88 139 - -
Lac2g0466 444 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515(InterPro)
Lac2g0466 444 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0466 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0466 Lac-Chr2:3405215 Lac3g1549 Lac-Chr3:14563680 4.60E-42 dispersed
Lac2g0466 Lac-Chr2:3405215 Lac4g2992 Lac-Chr4:48162938 3.80E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39