Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0475 | ATGGAGGATCGGGAGGAGGAGGAGAAGGCAGAGGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAAAGGCGGTGGATGTTGGAAAGAAAGTTGGCCTCCTCAGATGTACCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGCCGTGAGAAGAAATCTGGTGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTGATGCGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTATTTGATAATGGAATATCTGCCGGGTGGAGATATGATGACTCTGCTTATGAGGGAAGACACATTGACTGAAAGTGTGGCTAAATTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAACATAAAGCCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGTAGTTGGAGGAGTGCCAGTGAACAGCTACAGCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACGGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCTGATGATCCAATAAGCACCTGCAGAAAGATTGTCCATTGGAAAAATCACTTGAAGTTTCCAGAAGACGCCAAGTTGACAAATGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATATCAAATCAAAGCTCATCCTTGGTTCAAAGACGTTGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAACGATCTCAGCTTTGTTGGGTATACATACAAGAACTTTGATGCTGTCAAAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTACACAGCCGAACTAATAGCCAATGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA | 1551 | 42.62 | MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTESVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHEHKAMDDENLAEPMDIDDNRSSWRSASEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPISTCRKIVHWKNHLKFPEDAKLTNEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPNDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPIDVLNGTGGDYTAELIANEAEMQMLAVSGDPMLP | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3485174 | 3490669 | + | Lag0037113.1 | Lac2g0475 | 597739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0475 | 516 | ProSitePatterns | Protein kinases ATP-binding region signature. | 99 | 122 | IPR017441 | GO:0005524(InterPro) | |
Lac2g0475 | 516 | SUPERFAMILY | Protein kinase-like (PK-like) | 90 | 442 | IPR011009 | - | |
Lac2g0475 | 516 | CDD | MobB_NDR_LATS-like | 27 | 88 | - | - | |
Lac2g0475 | 516 | Pfam | Protein kinase domain | 285 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | Pfam | Protein kinase domain | 94 | 243 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | FunFam | Non-specific serine/threonine protein kinase | 177 | 244 | - | - | |
Lac2g0475 | 516 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 20 | 462 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lac2g0475 | 516 | FunFam | Non-specific serine/threonine protein kinase | 293 | 412 | - | - | |
Lac2g0475 | 516 | Gene3D | Transferase(Phosphotransferase) domain 1 | 179 | 411 | - | - | |
Lac2g0475 | 516 | ProSiteProfiles | Protein kinase domain profile. | 93 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | FunFam | Non-specific serine/threonine protein kinase | 413 | 423 | - | - | |
Lac2g0475 | 516 | SMART | pkinase_C_6 | 395 | 460 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 395 | 468 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | Pfam | Protein kinase C terminal domain | 413 | 458 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lac2g0475 | 516 | Gene3D | Phosphorylase Kinase; domain 1 | 84 | 178 | - | - | |
Lac2g0475 | 516 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 212 | 224 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | FunFam | Non-specific serine/threonine protein kinase | 54 | 176 | - | - | |
Lac2g0475 | 516 | SMART | serkin_6 | 93 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0475 | 516 | CDD | STKc_NDR_like | 91 | 459 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0475 | Lac-Chr2:3485174 | Lac4g1857 | Lac-Chr4:37880167 | 2.70E-182 | dispersed | |
Lac12g2162 | Lac-Chr12:38708462 | Lac2g0475 | Lac-Chr2:3485174 | 2.10E-185 | transposed | |
Lac1g3623 | Lac-Chr1:55326436 | Lac2g0475 | Lac-Chr2:3485174 | 9.40E-170 | transposed | |
Lac2g2758 | Lac-Chr2:42962246 | Lac2g0475 | Lac-Chr2:3485174 | 1.30E-14 | transposed | |
Lac6g0317 | Lac-Chr6:2595096 | Lac2g0475 | Lac-Chr2:3485174 | 2.90E-168 | transposed | |
Lac2g0475 | Lac-Chr2:3485174 | Lac3g1052 | Lac-Chr3:8601265 | 4.80E-200 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85978 | PF00069 | Pkinase | 5.70E-43 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0475 | K08790 | - | csv:101212228 | 1003.05 |