Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0475 ATGGAGGATCGGGAGGAGGAGGAGAAGGCAGAGGAAGAGGTGCAAGGTTCCAGCCTGACGATGGAGAAAGTGGCGGCGGCTAAGAAGTTTATAGAGAATCATTACAGAGCTCAGATGAAGAACATTCAAGAGCGGAAGGAAAGGCGGTGGATGTTGGAAAGAAAGTTGGCCTCCTCAGATGTACCTAAGGAAGAACAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGCGACTCAAAAGGCACAAGATTTGTGTTGATGATTTTGAGCTCTTAACCATCATTGGCAGGGGGGCTTTTGGTGAGGTTCGATTATGCCGTGAGAAGAAATCTGGTGATATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTGATGCGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTATTAGCAGAAGTTGCCAGCCATTGCATAGTGAAGCTTTATTACTCATTCCAGGATGCTGAGTACTTGTATTTGATAATGGAATATCTGCCGGGTGGAGATATGATGACTCTGCTTATGAGGGAAGACACATTGACTGAAAGTGTGGCTAAATTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATCCACAGGCACAACTATATTCACAGGGATATTAAACCTGACAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTTTCTGATTTTGGTCTCTGTAAGCCACTGGATTCTTTAACCCTATCAGCACTACATGAACATAAAGCCATGGATGATGAAAATTTGGCAGAACCAATGGATATTGATGATAATAGGAGTAGTTGGAGGAGTGCCAGTGAACAGCTACAGCATTGGCAAATGAACCGGAGGAAATTGGCATTTTCAACGGTTGGAACACCAGATTATATAGCTCCAGAAGTATTGCTTAAAAAAGGATATGGGATGGAGTGCGACTGGTGGTCCCTCGGTGCAATTATGTATGAGATGCTCGTAGGCTACCCTCCATTTTACTCTGATGATCCAATAAGCACCTGCAGAAAGATTGTCCATTGGAAAAATCACTTGAAGTTTCCAGAAGACGCCAAGTTGACAAATGAAGCAAAGGATCTCATTTGTAGGTTGCTTTGCGATGTTGAGCATAGACTTGGTACTGGAGGAGCATATCAAATCAAAGCTCATCCTTGGTTCAAAGACGTTGTCTGGGATAGACTTTATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACCCAGAACTTTATGAAGTTTGATGAATTGGATCCACCTATACCAGGAAAACGTGGCTCAGGACCGTCAAGGAAGATGCTATTGACTCCCAACGATCTCAGCTTTGTTGGGTATACATACAAGAACTTTGATGCTGTCAAAGGGCTTCATGGATCACTTGATTCTCAGAGATTGTCAATGAAACAGCCTCCAATTGACGTATTAAATGGCACTGGGGGAGACTACACAGCCGAACTAATAGCCAATGAGGCCGAAATGCAGATGCTAGCAGTATCAGGAGACCCCATGTTGCCATAA 1551 42.62 MEDREEEEKAEEEVQGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTESVAKFYIAQSVLAIESIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSLTLSALHEHKAMDDENLAEPMDIDDNRSSWRSASEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPISTCRKIVHWKNHLKFPEDAKLTNEAKDLICRLLCDVEHRLGTGGAYQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPNDLSFVGYTYKNFDAVKGLHGSLDSQRLSMKQPPIDVLNGTGGDYTAELIANEAEMQMLAVSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3485174 3490669 + Lag0037113.1 Lac2g0475 597739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0475 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524(InterPro)
Lac2g0475 516 SUPERFAMILY Protein kinase-like (PK-like) 90 442 IPR011009 -
Lac2g0475 516 CDD MobB_NDR_LATS-like 27 88 - -
Lac2g0475 516 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 Pfam Protein kinase domain 94 243 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 FunFam Non-specific serine/threonine protein kinase 177 244 - -
Lac2g0475 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 462 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac2g0475 516 FunFam Non-specific serine/threonine protein kinase 293 412 - -
Lac2g0475 516 Gene3D Transferase(Phosphotransferase) domain 1 179 411 - -
Lac2g0475 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 FunFam Non-specific serine/threonine protein kinase 413 423 - -
Lac2g0475 516 SMART pkinase_C_6 395 460 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 MobiDBLite consensus disorder prediction 1 20 - -
Lac2g0475 516 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Lac2g0475 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 FunFam Non-specific serine/threonine protein kinase 54 176 - -
Lac2g0475 516 SMART serkin_6 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0475 516 CDD STKc_NDR_like 91 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0475 Lac-Chr2:3485174 Lac4g1857 Lac-Chr4:37880167 2.70E-182 dispersed
Lac12g2162 Lac-Chr12:38708462 Lac2g0475 Lac-Chr2:3485174 2.10E-185 transposed
Lac1g3623 Lac-Chr1:55326436 Lac2g0475 Lac-Chr2:3485174 9.40E-170 transposed
Lac2g2758 Lac-Chr2:42962246 Lac2g0475 Lac-Chr2:3485174 1.30E-14 transposed
Lac6g0317 Lac-Chr6:2595096 Lac2g0475 Lac-Chr2:3485174 2.90E-168 transposed
Lac2g0475 Lac-Chr2:3485174 Lac3g1052 Lac-Chr3:8601265 4.80E-200 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85978 PF00069 Pkinase 5.70E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0475 K08790 - csv:101212228 1003.05