Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0488 ATGGATATGAACGGCAATAAACCTTTGAAAGCTGTTCGAACGAGTTCGTCTCTGAAGGAAGGTGAGAATGGAGGCCAAGTAGTGGTTGAGATTAGCAGAGATGAAAATGGCTACTCTGTGCCGAAGCAAAACAGAGTTGATTCACAAACCAAGGAGCCGACGGATTCGAGCTTTGGTTATGTCTACGATTCACCTCTCGCTCCCACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAAATGGAGCCCTCACGCACAGGAAATCTCTCAAAAGATCAATCCTCTCGAAACCCAAATCAAGATTTGGGGAACAGGCGTATTGCATCGATTCAGATATGTTTGACGAGAACCATTTGTCGTCGAGAGAACAAATCGGTGCAATTTCCTCCAGAAGCTCTGCTCTGAACACGCCGAAGGCACAACCTGAGGAAGTAGATGATGAAGATATCGTCAAGATGGAGCAGTTTGACAAAGAGAAGCGCAAGAAATTGAAGGTGAAGACATTGATTAAGTGGGTTGGAGTTCTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTAACCGTTTGAAGAAATGCTTCCTTTGGGGTTTGGAGGTTTGGAAATGGTGTTTGCTTGCAACTGTGATTTTGTGTGGAATGATATTTACTCATTGGGTTATGAATGTGGTTGTGATTTTGATTGAGGGGAACTTTTTGCTTAAGAAGAAAGTGCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACACTTTGGTTGACATTGGTTCTTGTTACATGGGCATCGTTTTTTGATCGGAGCAACTATAGGATTCCGAGATCAAGGATCACTGGGAAGATTTTGGATGCTGTTACATGGACTCTGGTATCCCTTCTGATAGGGGCATTTTTGTGGTTGGTAAAAACATTGTTGTTGAAAATACTGGCGTCCAAGTTCCATATGAACCGATTTTTCGACAGAATTCAGGAGTCCATTTTCCATCATCATGTTCTACAAACCCTCTCGAGGCCTCCATTAATTGGTATGACTGAAAGTACTGCCAAGACCAGCAGTGGTCGATTGAGTTTGAAGGGTAAAAAATCAGAGCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCTGTTACAAGTTCGGAGATGTCGATCTCGCAAATACTCGATGAAAGCTACCAAAATGTTGCTGATGGTGAGATCACTGATGAGATGGAAGTTGCCAAAGCTGCTGCTTACAAGATCTTCAACAATGTTGCTCTTCCTGGAAACAAGATCATTGAGGAAGAAGATCTTCTGAAATTCATGATCAAAGAAGAAGTTGATCTTGTGTTGCCACTCTTTGGAGTAGATGAGACAGGGCAGATTGACAAGAAAGCTCTAACAAATTTTTTGGTGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCCTGAAAGACACTAAAACAGCTGTGAAGCAATTGAATAATATAGTAGCAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCCACAACCAAAGTACTCGTCTTCCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTTGGAAATACTTGCAAGACCATATTTGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTCGGGGACCGTTGTGTTGTCGATGGCGTCCCGTTGTTGGTTGAAGAAATGAACATCCTGACAACGGTTTTCTTGAAACTCAACAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGCCAATCACTAATTACTACAGAAGTCCAGACATGAGCGACACCGTAGAATTCTCGATCGGTTTCACAACGCCATTGGAGAGGATCGGGACCATGAAAGAGAGAATAAGGAGGTATTTGGAGAAGACTCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGCAGGAGATCATAGACGTGAATAAGATAAAGATTGCTCTTTATACAAACCACACCATGAATTTTCAAGATTGGACTGAGAAGAACCGGCGAAGAACCGAGCTTGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCGGTCGAGGGGCGTTGA 2187 42.52 MDMNGNKPLKAVRTSSSLKEGENGGQVVVEISRDENGYSVPKQNRVDSQTKEPTDSSFGYVYDSPLAPTVNKPPKIPSSNGALTHRKSLKRSILSKPKSRFGEQAYCIDSDMFDENHLSSREQIGAISSRSSALNTPKAQPEEVDDEDIVKMEQFDKEKRKKLKVKTLIKWVGVLCIIGCLVASLTVNRLKKCFLWGLEVWKWCLLATVILCGMIFTHWVMNVVVILIEGNFLLKKKVLYFVHGLKKSVQVTLWLTLVLVTWASFFDRSNYRIPRSRITGKILDAVTWTLVSLLIGAFLWLVKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLSRPPLIGMTESTAKTSSGRLSLKGKKSEHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQILDESYQNVADGEITDEMEVAKAAAYKIFNNVALPGNKIIEEEDLLKFMIKEEVDLVLPLFGVDETGQIDKKALTNFLVKVYQERKTLAHALKDTKTAVKQLNNIVAALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTVFLKLNNEKVYYPNSVLATKPITNYYRSPDMSDTVEFSIGFTTPLERIGTMKERIRRYLEKTPQHWHPNHSVVVQEIIDVNKIKIALYTNHTMNFQDWTEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3556662 3559556 + Lag0037126.1 Lac2g0488 597752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0488 728 MobiDBLite consensus disorder prediction 37 57 - -
Lac2g0488 728 FunFam Predicted mechanosensitive ion channel 566 615 - -
Lac2g0488 728 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 66 722 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Lac2g0488 728 PIRSF Memb_At2g17000 6 726 IPR016688 -
Lac2g0488 728 MobiDBLite consensus disorder prediction 1 82 - -
Lac2g0488 728 Pfam Mechanosensitive ion channel, beta-domain 559 616 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac2g0488 728 Gene3D - 566 615 IPR023408 -
Lac2g0488 728 SUPERFAMILY Sm-like ribonucleoproteins 556 615 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0488 Lac-Chr2:3556662 Lac9g1858 Lac-Chr9:38358597 3.60E-132 dispersed
Lac2g0488 Lac-Chr2:3556662 Lac2g0489 Lac-Chr2:3566675 7.90E-265 tandem
Lac2g0488 Lac-Chr2:3556662 Lac3g1066 Lac-Chr3:8737565 3.10E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0488 K22048 - csv:101217197 1084.71