Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0497 ATGTTGCAGGGGTTTTCTGGTTCTTGTGACTGGCTATGGAAATTGCAGCAGTGGTGTAAAATGAAGTTTGTGAAGAGGGCAGCCATGGCATTTCCTGTTGAGCTTGTTGTTCTGGTTTTTCTCTTCTGTGCTACCGTTCAAGTGGTGGATTCTGATGATGGAGCTACGTTGTTGGAAATAAAGAAATCATTCAGGGATGTGGATAATGTTCTATATGACTGGACAAGCTCACCTTCTCCAGACTACTGTATATGGAGAGGTGTCACCTGTGACAATGCCACTCTCAATGTCATCTCTCTTAATCTTTCAGGACTCAATCTCGACGGAGAAATTTCTCCTTCGGTTGGCAACCTCAAGGGCCTGCAAACTTTGGATTTGAGGGGGAATAGTCTTTCTGGGCAAATTCCAGATGAGATTGGTGACTGCTCTTCGTTAATAAATCTGGATTTATCGTTTAATGAGATTTATGGAGACATACCCTTTTCCATTTCGAAGTTGAAGCAACTGGAAATGCTAGTTCTGAAGAATAATCGGCTTATTGGACCGATTCCGTCGACCCTATCTCAGATTCCAAACTTGAAGGTCTTAGATCTAGCACAGAATAATCTTAGCGGGGAGATACCAAGACTAATTTACTGGAATGAAGTGTTGCAATATCTTGGTCTGCGCGGCAACAACTTAGTGGGTACACTTTCTCCAGATATGTGTCAGCTCACTGGCTTATGGTATTTTGATGTGAGAAACAACAGTTTAACTGGCAGCATACCTCAAACTATAGGCAACTGCACAGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTCACTGGAGAGATACCATTCAATATTGGTTTCCTTCAAGTAGCCACATTGTCCTTGCAGGGTAATCAGTTATCAGGTCCCATCCCACCAGTTATAGGTCTTATGCAGGCGCTTGCTGTGCTAGATCTGAGCTGCAACATGTTAACTGGTCCAATCCCTTCTATCCTGGGGAATTTGACTTATACAGAGAAACTGTACTTGCATAGTAACAAGCTCACTGGGTCCATTCCGGCAGAGCTCGGGAATATGACGAAGCTCCATTATCTGGAACTGAATGATAATCATCTTACTGGGAATATTCCAGCTGAGCTTGGGAAACTCACTGATTTGTTCGATCTAAATGTTGCTAATAACAACCTTGGAGGGCCTATCCCTGATAATCTTAGCTCATGCACAAATCTCAACAGCCTAAATGTGCATGGCAACAAGTTGAATGGAACCATTCCGCCGTCTTTCCAGAGGCTAGAGAGTATGACTTACTTGAACCTCTCCTCAAATGATCTACGAGGTCCTATTCCAGTCGAGCTGTCTCGGATAGGCAATTTGGATACGTTAGACATTTCAAATAACAAAATTAGTGGCACAATATCTTCATCCTTCGGCGATCTGGAGCATCTCCTAAAGCTAAATTTAAGCAGGAACCATTTAACGGGAATCATTCCAGCTGAGTTTGGTAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTTTCTGGATTCATTCCTCAAGAACTGAGTCAACTTCAAAATCTTCTCTCCTTGAGACTTGAAAACAACAATTTATCTGGGGACGTCACATCGCTGATTAACTGTCTAAGTCTTACCGAATTAAACGTATCTTATAACAATCTTGTTGGTGACATTCCCACAAGCAACAACTTCTCAAGGTTTTCATCTGACAGTTTCCTTGGAAATCTTGCCCTCTGTGGATATTGGAACAACAACAACTACCCCTGTCAAGAAACTCATACGACAGAGCGAGTGACCATATCTAAAGCTGCTATCCTGGGGATTGCTCTTGGTGCCTTGGTGATTCTTCTAATGATCCTCTTGACAGTTTGCCGTCCAAGCAATACAATACCTTTTCCAGATGGAACACTTGATAAACCAGTTACTTACTCAACTCCCAAGCTAGTGATCCTTCACATGAATATGGCGCTTCATGTGTACGAAGATATTATGAGGATGACCGAAAACTTAAGCGAAAAGTACATAATCGGATATGGAGCTTCAAGCACAGTCTACAAATGTGTACTGAAGAATTGCAAACCTGTGGCTATCAAAAAGCTCTACTCTCACCAACCCCTAAGCATGAAGGCATTCGAGACCGAACTCGAAACTGTGGGTAGCATCAAACACAGGAATCTAGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGACCATCTACACGGCTCTAGCTCTACCAAGAAGAAAAAGCTAGACTGGGACACAAGGCTTAATATTGCACATGGAGCAGCCCAAGGACTGTCATATCTACACCATGATTGTAGCCCTCGTATTATCCACAGGGATGTCAAGTCATCAAACATTCTATTAGACAAGGATTTTGAAGCCCATCTCACTGATTTCGGCATCGCCAAGAGTTTATGCACCTCGAAAACATATACGTCCACTTATATCATGGGAACTATCGGATACATCGATCCAGAGTATGCAAGGACTTCCCGACTCACCGAGAAGTCTGATGTTTACAGCTTTGGCATTGTGTTACTTGAATTGCTCACGGGAAGGAAAGCTGTGGACAATGAATCAAATCTCCACCAATTGATCTTATCAAAGACAGCCAACAATGCTGTAATGGAGACAGTTGATCCTGAAATAACTGCAACTTGCAAGGACCTTGGAGCTGTAAAGAAGGCATTTCAGCTTGCTCTCCTATGCACCAAGAGGCAGCCATCCGATCGACCAACAATGCACGAAGTAACGCGCGTCATCGGGAGTCTTCTGCCCTCCGCCACACCACTAAAGCCAACACCAACCTTAACAACCATGCCCCCATCTGCAAAAGTCCCTTGCTACAAGGATGAGTACGCAAATCTAAAAACGCCACACGTGCTGAACTGCCCGTCGATGAGCACCTCAGATGCCCAGCTCTTCCTCAAGTTCGGAGAGGTTATATCACAGAACAGTGAGTAA 3036 43.68 MLQGFSGSCDWLWKLQQWCKMKFVKRAAMAFPVELVVLVFLFCATVQVVDSDDGATLLEIKKSFRDVDNVLYDWTSSPSPDYCIWRGVTCDNATLNVISLNLSGLNLDGEISPSVGNLKGLQTLDLRGNSLSGQIPDEIGDCSSLINLDLSFNEIYGDIPFSISKLKQLEMLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPSILGNLTYTEKLYLHSNKLTGSIPAELGNMTKLHYLELNDNHLTGNIPAELGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGTIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGTISSSFGDLEHLLKLNLSRNHLTGIIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLLSLRLENNNLSGDVTSLINCLSLTELNVSYNNLVGDIPTSNNFSRFSSDSFLGNLALCGYWNNNNYPCQETHTTERVTISKAAILGIALGALVILLMILLTVCRPSNTIPFPDGTLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHQPLSMKAFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIAHGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGIVLLELLTGRKAVDNESNLHQLILSKTANNAVMETVDPEITATCKDLGAVKKAFQLALLCTKRQPSDRPTMHEVTRVIGSLLPSATPLKPTPTLTTMPPSAKVPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3633493 3640672 + Lag0037135.1 Lac2g0497 597761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0497 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0497 1011 Pfam Leucine rich repeat 455 514 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine rich repeat 312 370 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Gene3D Transferase(Phosphotransferase) domain 1 753 953 - -
Lac2g0497 1011 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 353 943 IPR051716 -
Lac2g0497 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 215 324 - -
Lac2g0497 1011 Gene3D Phosphorylase Kinase; domain 1 647 752 - -
Lac2g0497 1011 ProSiteProfiles Protein kinase domain profile. 677 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0497 1011 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524(InterPro)
Lac2g0497 1011 CDD STKc_IRAK 683 948 - -
Lac2g0497 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 50 214 - -
Lac2g0497 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 753 956 - -
Lac2g0497 1011 Pfam Protein kinase domain 680 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0497 1011 Gene3D Ribonuclease Inhibitor 50 212 IPR032675 -
Lac2g0497 1011 Pfam Leucine rich repeat N-terminal domain 51 91 IPR013210 -
Lac2g0497 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 325 598 - -
Lac2g0497 1011 Pfam Leucine Rich Repeat 432 451 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 550 568 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 241 262 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 266 285 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 121 142 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Pfam Leucine Rich Repeat 192 211 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Gene3D Ribonuclease Inhibitor 287 373 IPR032675 -
Lac2g0497 1011 Gene3D Ribonuclease Inhibitor 374 468 IPR032675 -
Lac2g0497 1011 Gene3D Ribonuclease Inhibitor 469 596 IPR032675 -
Lac2g0497 1011 ProSiteProfiles Leucine-rich repeat profile. 192 214 IPR001611 GO:0005515(InterPro)
Lac2g0497 1011 Gene3D Ribonuclease Inhibitor 213 286 IPR032675 -
Lac2g0497 1011 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 648 752 - -
Lac2g0497 1011 SMART LRR_typ_2 525 548 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 118 142 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 357 381 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 477 500 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 238 262 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 190 214 IPR003591 -
Lac2g0497 1011 SMART LRR_typ_2 429 453 IPR003591 -
Lac2g0497 1011 SMART serkin_6 677 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0497 1011 SUPERFAMILY L domain-like 52 286 - -
Lac2g0497 1011 SUPERFAMILY Protein kinase-like (PK-like) 655 943 IPR011009 -
Lac2g0497 1011 SUPERFAMILY L domain-like 288 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0497 Lac-Chr2:3633493 Lac5g2273 Lac-Chr5:41421748 6.20E-66 dispersed
Lac2g0497 Lac-Chr2:3633493 Lac11g1265 Lac-Chr11:18293078 3.40E-149 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85980 PF00069 Pkinase 1.20E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0497 K20718 - csv:101214398 1830.07