Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0512 ATGGAATCAGAGGATTCAGTGAGATTAAGATTGGAGGAATTGCACAAAGATTTGGGGAAGAAACAGAGATTCGAGGAAGCAGTTTCCACCATTATTTCTCTGCTTCAAGATCGCTATACTACTGCTTCTCCTTCTCTACGCAAATCGGTCATTCATCTTTCTCCTCTTTTTGTTCAATTTTGTTATCCTACTGATTCCAATGTTCCATTTCTTGTGCAATTGTTTCGTTATGTGCTTTTTCCTGCGGAATTTTTCTATTCCGTAATTTGCCGAGTTGCAACAGTATTGAAGACTAGGTTTACGGCCCCGGGGTTTTGGCTTGCTGGTCTCAAGCTTTTCGAGTTTTCTTTGACTCTGCTCTCTAATCATTCTGAGAGACAATACATACAGACTTGCGTAGCTCAGGCCAAGGAAATTCTGCACCAAATTGACAATCCATCTCCATCTCCACAAAGCACTTCATCAAATGGAGGCTATCTTTTCGAGGGCCATCTCACTGTTGATCCGGAGCCACCCCAGCCCCAGTGGCTGGTACAGTCTAACCTCATGACAGCCGCTGCAGCTACGCTATTTAATGCTGAATCTTCTCAAGGTTCAGCTGAGAACAACAACACTTATGAGAATGCTGCTAATATTTTTCAAGCACTTATGGAAAATCTAGATAACGCTGTAGATGGGCTTATGGATTTAGAAACGGCTGGCGGACCACCAAAAGTCCCTCCTGCAAGTAAAGAGGTCGTCGCAAAACTTCCCGTAATTACTATAACAGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTACAATGCGCCATTTGCAGGGAAAACTTAGCTGTTGATGACAAGATGCAGGAGTTGCCTTGCAAGCACACATTCCATCCACCTTGTTTGAAGCCATGGCTGGATGAGCATAACTCTTGTCCGATCTGTCGACATGAACTGCCCACCGACGACCATGCATATGAGAGCTGGAAGGAGCGAGAGAAGGAGGCCGAAGAAGAGAGAAAAGGAGCTGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTGA 1050 44.38 MESEDSVRLRLEELHKDLGKKQRFEEAVSTIISLLQDRYTTASPSLRKSVIHLSPLFVQFCYPTDSNVPFLVQLFRYVLFPAEFFYSVICRVATVLKTRFTAPGFWLAGLKLFEFSLTLLSNHSERQYIQTCVAQAKEILHQIDNPSPSPQSTSSNGGYLFEGHLTVDPEPPQPQWLVQSNLMTAAAATLFNAESSQGSAENNNTYENAANIFQALMENLDNAVDGLMDLETAGGPPKVPPASKEVVAKLPVITITEEVLAKLGRDVQCAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3765430 3767413 - Lag0037150.1 Lac2g0512 597776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0512 349 SUPERFAMILY RING/U-box 263 316 - -
Lac2g0512 349 Coils Coil 320 340 - -
Lac2g0512 349 CDD RING-H2_RNF126-like 268 310 - -
Lac2g0512 349 SMART ring_2 269 309 IPR001841 -
Lac2g0512 349 Pfam Ring finger domain 268 310 IPR001841 -
Lac2g0512 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 316 IPR013083 -
Lac2g0512 349 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Lac2g0512 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 154 315 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lac2g0512 349 FunFam E3 ubiquitin-protein ligase RNF181 230 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0512 Lac-Chr2:3765430 Lac8g2020 Lac-Chr8:38672890 1.80E-17 dispersed
Lac2g0512 Lac-Chr2:3765430 Lac10g0321 Lac-Chr10:2490345 6.70E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0512 K16274 - csv:101218065 407.912