Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0516 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGATATCGAAGCCCTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTTGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACCGAGAAAGGATCTTCACAATTACACTATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTTAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCAATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACCGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTATACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCACGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCAGCAAAGAGGGAAATACAATTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTATTTAGCAAGGCTGGGGAGACAATTGGAATCAATTATATGGGAATGGACATAACTGACCAGGTGAAAAAACGAGAAAAAATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCAAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTATCCACCACGAAACTTGATCGGGAACAGCGACATCTGTTGGATGTTATGCTGTCGTCAGGGGACTTGGTGCTTCAGCTTATAAATGATATCTTAGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAGACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATTAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGGAAAGGAGAAGAATGCCATAAGAAATCAACGGCTGATAACGCAACACTTCCAGCAAATGGTTTGCAAGAAGGAACATGTCCTCCAGCCCCTCAGAATGGCTTGTTTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAGTAGAGAAAACAAATCTTGTTCACCTGAAACGACGGTATGGATACGCTGTGATGTATACGACACAGGAATCGGAATACCAGAAAATGCACTACCAAACCTTTTTAGGAAGTACATGCAAGCTAGCGCCGATCATGCTCGAAAGTATGGAGGGACTGGTCTCGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTGACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCGTACAAGGTTTCAACCACCTGCAGTCATTCCGACGATTCCGATGAGCTCTCAGATGACGAGTCCACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCACTGTCATCTTCTAATGGATCCACAAGGATCTCAAACTCATTATTACATACAACTGGATATCCCAGCTCAACCAAACTCAATGGCTTTGCTGAAGTTTCTTATCCTGTTCCCTCAAACAACATCACAACACAAGAGACTGCTTCTCTTAGAGATGATCGTTGCTCCAATGGTGCAGTAACCTCAAGCGAACCACAATGTTCATCAAGTCATATCAACTCAAATCTCGATAATGAGAAATCAACTCTTGGAGCAAACCGAAATCAACCCGACACAAATGCTCGGTTCCAAAATGTCGGTGTGAATTCCCTTCACAGATCAGAAACAACAAAGCAAGAAGAAACATTAGAAAAGCCAAGTAATAAACTTCAAAAAACGGATCAGGGGAAAGAGAGATTCGATGCAAGTTCCCATAGCAGAACTAGCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGGATTCTTCTTGTTGAGGATAACAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAACGGCATTGAAGCTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGCTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACGGGCAACTGGGAGGCAGCTGTAAATGCTGGAATCGAGCCAACTACACCTTGTTGGACTCCTTCCTCCTCCCGCAAAAGGATGCCCATCATTGCTATGACGGCGAATGCATTGTCAGAAAGCGCAGACGAGTGTTATGAAAACGGCATGGACTCATTAAGAGCACCAGACCGCATTTCATTGTATCGAAAAGCATATAGAAATTCGAACGCGCAAAGAGTGTCGACATTGCAATTTCTGTCGAGAAACCTCTGGCGCAACAACAGCTACGAGCCAAGCCTCATCCTGAAAAATCCAAACACGGACGCGAAACGCCATAATTAG 3120 42.34 MVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLHYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASIQREQMLAEKLHENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECHKKSTADNATLPANGLQEGTCPPAPQNGLFGQKHGDRNHLHCDAPGTPSKSETTMNGSRENKSCSPETTVWIRCDVYDTGIGIPENALPNLFRKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSHSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRISNSLLHTTGYPSSTKLNGFAEVSYPVPSNNITTQETASLRDDRCSNGAVTSSEPQCSSSHINSNLDNEKSTLGANRNQPDTNARFQNVGVNSLHRSETTKQEETLEKPSNKLQKTDQGKERFDASSHSRTSSSGSEVTMALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPAMDGLQATRLIRSFEETGNWEAAVNAGIEPTTPCWTPSSSRKRMPIIAMTANALSESADECYENGMDSLRAPDRISLYRKAYRNSNAQRVSTLQFLSRNLWRNNSYEPSLILKNPNTDAKRHN 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3814689 3826439 + Lag0037154.1 Lac2g0516 597780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0516 1039 SUPERFAMILY CheY-like 862 984 IPR011006 -
Lac2g0516 1039 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 CDD REC_hyHK_CKI1_RcsC-like 864 983 - -
Lac2g0516 1039 Gene3D - 858 986 - -
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 MobiDBLite consensus disorder prediction 743 856 - -
Lac2g0516 1039 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 41 984 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Lac2g0516 1039 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 671 IPR036890 -
Lac2g0516 1039 Coils Coil 92 112 - -
Lac2g0516 1039 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 Pfam Response regulator receiver domain 864 931 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 SMART REC_2 862 998 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 815 845 - -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 524 589 - -
Lac2g0516 1039 Coils Coil 188 208 - -
Lac2g0516 1039 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 MobiDBLite consensus disorder prediction 743 814 - -
Lac2g0516 1039 SMART HKATPase_4 482 672 IPR003594 -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 572 589 - -
Lac2g0516 1039 FunFam Putative histidine kinase 5 359 436 - -
Lac2g0516 1039 Gene3D PAS domain 213 348 - -
Lac2g0516 1039 FunFam Histidine kinase 5 213 348 - -
Lac2g0516 1039 Coils Coil 342 362 - -
Lac2g0516 1039 Gene3D - 436 677 IPR036890 -
Lac2g0516 1039 Gene3D - 367 435 - -
Lac2g0516 1039 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Lac2g0516 1039 ProSiteProfiles Response regulatory domain profile. 863 1002 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0516 Lac-Chr2:3814689 Lac8g2211 Lac-Chr8:40434116 4.30E-46 dispersed
Lac2g0516 Lac-Chr2:3814689 Lac9g1967 Lac-Chr9:39417920 1.50E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23456 PF02518 HATPase_c 6.20E-28 CL0025 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0516 - - - 0.0