Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0516 ATGGTCTGCGAGATGGAGACTGATGTTATTGAAGATATGGATATCGAAGCCCTTCCTTCTATGTGGCCTGAGGATGTTGGACCAGATGTTAGAAAGCAGTTCAACGTTGAAAGGCCAGGAGCAGATCAAGATATGTTGGAAGAAGTTAACATAATAGAGGAACCGACGATTGTTGATTTCAAGAGACTTATAGAGTTAACTAACTATACCGAGAAAGGATCTTCACAATTACACTATCTTGCAAAACAGTGGGAGTATAAGCAAGCAAATGCTGTGCGTCTCCTTAAAGAAGAACTTGACATCCTTAGCAAGCAGAGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAACATCTTTTTGAGGAAGAAAGATATGCTGGTGATAAACGTCCAATTTCAATTTTGGAAGAATCTTGTGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTCGTTGTTCAAAGTAAGAGAGTCGAAATTGATGCAGAGTATGATACCGTGACATACTGGAAGCAGCGAGCCATGGATCTGGAAAAATTATTGGAAGCAAGTATACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCACGAAAACATAAAAAATATTGAAAAGCAGTCCTCACCAGTTGAGGAGTTGTCACAGATTCTGAAAAGAGCCGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCAGTTGTTTTTGGTCATCAGGACAAAGAGTTGCGGTACCGATTTATCTACAATCATTTTCCAAGTTTGCAAGAAGAGGATATTATAGGAAGAACAGACGTTGAAATTTTTAGTGGTGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTATGGAGAAAGGGTTGCCAGCAAAGAGGGAAATACAATTTGATACAGAATTATTTGGGCTGAAGACCTTTTTGATTTACGTTGAACCTGTATTTAGCAAGGCTGGGGAGACAATTGGAATCAATTATATGGGAATGGACATAACTGACCAGGTGAAAAAACGAGAAAAAATGGCAAAGCTTCGTGAGGAGATAGCAGTACAAAAAGCAAAGGAATCAGAGCTGAACAAAACAATTCATATCACGGAGGAAACAATGCGAGCAAAGCAAATGCTAGCAACCATGTCCCATGAAATTAGATCTCCACTGTCTGGAGTGGTTAGTATGGCTGAGATCCTATCCACCACGAAACTTGATCGGGAACAGCGACATCTGTTGGATGTTATGCTGTCGTCAGGGGACTTGGTGCTTCAGCTTATAAATGATATCTTAGACCTGTCTAAAGTTGAATCAGGAGTAATGAAGTTGGAAGCTACAAAATTCCGTCCAAGAGAGGTTGTAAGACATGTTCTGCAGACTGCTGCTGCATCATTGCGAAAATTCTTAGTTCTGGAGGGACGTATAGCAGATGATGTTCCTATAGAGGTCATTGGAGATGTTCTTAGGATTCGGCAAATCCTCACCAACTTGATCAGCAACGCAATTAAGTTCACTCATCAAGGGAAGGTTGGAATTAACCTTTATGTGTTACCCTATCCACCCACTGGGAAAGGAGAAGAATGCCATAAGAAATCAACGGCTGATAACGCAACACTTCCAGCAAATGGTTTGCAAGAAGGAACATGTCCTCCAGCCCCTCAGAATGGCTTGTTTGGCCAAAAACACGGTGACAGAAATCATTTGCATTGTGATGCTCCAGGAACCCCAAGCAAGAGTGAAACCACAATGAATGGAAGTAGAGAAAACAAATCTTGTTCACCTGAAACGACGGTATGGATACGCTGTGATGTATACGACACAGGAATCGGAATACCAGAAAATGCACTACCAAACCTTTTTAGGAAGTACATGCAAGCTAGCGCCGATCATGCTCGAAAGTATGGAGGGACTGGTCTCGGGCTGGCAATATGCAAACAACTGGTTGAATTGATGGGTGGTCATCTGACCGTTACCAGCCGAGAGAACCATGGATCTACATTTACATTTGTATTGCCGTACAAGGTTTCAACCACCTGCAGTCATTCCGACGATTCCGATGAGCTCTCAGATGACGAGTCCACAAATGACGAAATGACTGAGGGCTTTTTCCAATTCCAACCCCACAGTTTCAGTTCACTGTCATCTTCTAATGGATCCACAAGGATCTCAAACTCATTATTACATACAACTGGATATCCCAGCTCAACCAAACTCAATGGCTTTGCTGAAGTTTCTTATCCTGTTCCCTCAAACAACATCACAACACAAGAGACTGCTTCTCTTAGAGATGATCGTTGCTCCAATGGTGCAGTAACCTCAAGCGAACCACAATGTTCATCAAGTCATATCAACTCAAATCTCGATAATGAGAAATCAACTCTTGGAGCAAACCGAAATCAACCCGACACAAATGCTCGGTTCCAAAATGTCGGTGTGAATTCCCTTCACAGATCAGAAACAACAAAGCAAGAAGAAACATTAGAAAAGCCAAGTAATAAACTTCAAAAAACGGATCAGGGGAAAGAGAGATTCGATGCAAGTTCCCATAGCAGAACTAGCAGTAGTGGTTCTGAAGTAACAATGGCATTGGAACCCAGGATTCTTCTTGTTGAGGATAACAAGACCAATATTATGGTGACTCAGTCCATGATGAAGAAGTTCGGCCAAAAAATCGACGTGGTAACCAACGGCATTGAAGCTGTTCGTGCAGTTCAACGACGTTCTTACGATCTCATTCTCATGGATGTATTCATGCCAGCTATGGATGGCCTTCAAGCTACAAGGTTAATTCGTTCTTTTGAGGAAACGGGCAACTGGGAGGCAGCTGTAAATGCTGGAATCGAGCCAACTACACCTTGTTGGACTCCTTCCTCCTCCCGCAAAAGGATGCCCATCATTGCTATGACGGCGAATGCATTGTCAGAAAGCGCAGACGAGTGTTATGAAAACGGCATGGACTCATTAAGAGCACCAGACCGCATTTCATTGTATCGAAAAGCATATAGAAATTCGAACGCGCAAAGAGTGTCGACATTGCAATTTCTGTCGAGAAACCTCTGGCGCAACAACAGCTACGAGCCAAGCCTCATCCTGAAAAATCCAAACACGGACGCGAAACGCCATAATTAG 3120 42.34 MVCEMETDVIEDMDIEALPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLIELTNYTEKGSSQLHYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYAGDKRPISILEESCDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTYWKQRAMDLEKLLEASIQREQMLAEKLHENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKELRYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVMEKGLPAKREIQFDTELFGLKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQTAAASLRKFLVLEGRIADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPTGKGEECHKKSTADNATLPANGLQEGTCPPAPQNGLFGQKHGDRNHLHCDAPGTPSKSETTMNGSRENKSCSPETTVWIRCDVYDTGIGIPENALPNLFRKYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVTSRENHGSTFTFVLPYKVSTTCSHSDDSDELSDDESTNDEMTEGFFQFQPHSFSSLSSSNGSTRISNSLLHTTGYPSSTKLNGFAEVSYPVPSNNITTQETASLRDDRCSNGAVTSSEPQCSSSHINSNLDNEKSTLGANRNQPDTNARFQNVGVNSLHRSETTKQEETLEKPSNKLQKTDQGKERFDASSHSRTSSSGSEVTMALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIEAVRAVQRRSYDLILMDVFMPAMDGLQATRLIRSFEETGNWEAAVNAGIEPTTPCWTPSSSRKRMPIIAMTANALSESADECYENGMDSLRAPDRISLYRKAYRNSNAQRVSTLQFLSRNLWRNNSYEPSLILKNPNTDAKRHN 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3814689 3826439 + Lag0037154.1 Lac2g0516 597780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0516 1039 SUPERFAMILY CheY-like 862 984 IPR011006 -
Lac2g0516 1039 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 CDD REC_hyHK_CKI1_RcsC-like 864 983 - -
Lac2g0516 1039 Gene3D - 858 986 - -
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 632 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 656 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 PRINTS Bacterial sensor protein C-terminal signature 597 611 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac2g0516 1039 MobiDBLite consensus disorder prediction 743 856 - -
Lac2g0516 1039 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 41 984 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Lac2g0516 1039 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 671 IPR036890 -
Lac2g0516 1039 Coils Coil 92 112 - -
Lac2g0516 1039 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 Pfam Response regulator receiver domain 864 931 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 SMART REC_2 862 998 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 CDD HATPase_EvgS-ArcB-TorS-like 487 669 - -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 815 845 - -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 524 589 - -
Lac2g0516 1039 Coils Coil 188 208 - -
Lac2g0516 1039 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac2g0516 1039 MobiDBLite consensus disorder prediction 743 814 - -
Lac2g0516 1039 SMART HKATPase_4 482 672 IPR003594 -
Lac2g0516 1039 MobiDBLite consensus disorder prediction 572 589 - -
Lac2g0516 1039 FunFam Putative histidine kinase 5 359 436 - -
Lac2g0516 1039 Gene3D PAS domain 213 348 - -
Lac2g0516 1039 FunFam Histidine kinase 5 213 348 - -
Lac2g0516 1039 Coils Coil 342 362 - -
Lac2g0516 1039 Gene3D - 436 677 IPR036890 -
Lac2g0516 1039 Gene3D - 367 435 - -
Lac2g0516 1039 ProSiteProfiles Histidine kinase domain profile. 378 672 IPR005467 -
Lac2g0516 1039 ProSiteProfiles Response regulatory domain profile. 863 1002 IPR001789 GO:0000160(InterPro)
Lac2g0516 1039 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 595 670 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0516 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0516 Lac-Chr2:3814689 Lac8g2211 Lac-Chr8:40434116 4.30E-46 dispersed
Lac2g0516 Lac-Chr2:3814689 Lac9g1967 Lac-Chr9:39417920 1.50E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23456 PF02518 HATPase_c 6.20E-28 CL0025 Lac TR