Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0544 ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCGCAACAGGCCGGAACCATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACTGGCAAGCACGGGCATGCTAAGTGTCACTTTGTGGGAATTGACATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCATCATCTCACAATTGTGATGTGCCTCATGTTAATCGTACTGATTATCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGTCTTTTAACTGACAATGGTAACACCAAGGATGATTTGAGGCTTCCAACTGATGATAGCCTGCTCACTCAGATTAAGGATGGGTTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGATATCGGCCCGAAGAACTAG 483 48.45 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4047787 4050257 - Lag0037182.1 Lac2g0544 597808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0544 160 MobiDBLite consensus disorder prediction 1 21 - -
Lac2g0544 160 Pfam Translation initiation factor 5A-like, N-terminal 17 79 IPR048670 -
Lac2g0544 160 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Lac2g0544 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac2g0544 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lac2g0544 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lac2g0544 160 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Lac2g0544 160 Gene3D - 1 85 IPR014722 -
Lac2g0544 160 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac2g0544 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lac2g0544 160 Gene3D - 86 159 IPR012340 -
Lac2g0544 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lac2g0544 160 CDD S1_eIF5A 86 156 - -
Lac2g0544 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lac2g0544 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0352 Lac-Chr13:2523627 Lac2g0544 Lac-Chr2:4047787 1.00E-84 transposed
Lac2g0544 Lac-Chr2:4047787 Lac3g0213 Lac-Chr3:1527886 3.90E-84 wgd
Lac2g0544 Lac-Chr2:4047787 Lac6g0592 Lac-Chr6:4950521 3.50E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0544 K03263 - mdm:103416502 321.627