Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0546 ATGGCCTTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTTTTGGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGAGGATTATAAAGTCTATATTGGAGGCATTGTGGGACAACTTCGCGATAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCAAAGCCTGATTACAAATATATTATCTGTGTATGATATGACTGTCATGGACTATCCTCGACAATATGAAGGCTGCCCTCTACTCACTATGGAGATGGTCCACCACTTCTTAAGATCAAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCAGTCTTGGCGTTCATGTTGGCTGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGGCACCTCTTAATCCATTGCCTTCACAATTGAGGTATCTTCAATATGTGTCAAGAAGAAATGTGGCATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGACCAATATTTAGGATATATGGACAGGATCCTTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATTCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGATAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATCCTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCACTTATTTCAATTGAATTGCCAAATATTGAGGAAAAAGATGGTCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCGAATTTACTTCAAGAGAAACTGGTTAGTTCCGGTTCTTTAGAGAAAAACCAGTTGCTTGACTTATCTTTTGAAAAACTAATCTCGGAATCAGAGACATCTGAAGACATCATTGGAAGTCCCCCATTGAAGATACAAACAAATCAATCTCAGACTTCTTCCGAACTATATCATGCTGCAAGTTCAGTGAGATCAGAGGTTGAACCCCCAGAATTACAGGTTGCTCTCCAACTATCCCCTCAGACTAAAATCATTACCCAACGAATACCCCAACCTTCCTTGTCTACACCAGTTTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCAATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACACGATCATTCCAAATCAAGTAGTAACGAAGTCATACATCCAGTGACAATATCTTCACCATCATCTGCTCGCTTGACTAGAAGTGTTCCAGATTCACCTAAAGATATTCAACCCAGTAACCTTCCTATTTTGCCTCTCTCGCTGCCATTAGAGCCAAGTTCTACATTAGAAAATTCTTCCACCACCAAGTCAACTTCAACCATTCCTGATCCGTTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCGATTTCTCAACTGTCTCAAACCACACCACGGGGGAGAAGTCAATTATCACCAGCTTCATTACAACCAACACCCACCTTTATTCCTGGGAAGTCCCCACCCTCTTTTAACGAGAGCTTACCTTCGATAGCCTCTTCTTCTCCTTTATTAAGATCATCCCCATCTTCCTGTACTAAGGAATCATTTTCCATTCCCACTCCTCCCCTCTCTCATCTTGATTCACCTTCATTTGTAGTAACATCTCCATCTTGTAGTAGGACGAACAGTTCAATTTCCCCATCTCCACCACAACCTTCGTCTACAACACTACTATTATCCTCTACAAAGACATCAATTCCAATTGTTCCTCAATCTTCTTTGTCCAGTGATCATCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGAAGATTATCCCACCCCCTCCCCCTCCCCCTCCCCCTCCTCCATCGTGTTCTAGCCCTAACTTGGGCACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCCCCACCTCCACCTCCACCTCCTTCATGGAAGGACTCTATAATCACTGTCATGCATGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCCCCATCTTCTTTGAGTCCAACATCTACTTGTGGTTCTGGTTTCACGTCTTTAGGGCCACCACCACCGCCACCACCTCCTCCTAGTCTGTCACCACAGGATTCTACCACGATAATTAGGAACTTGACGGTTGAACCTGGCCCTCCGCCTCCCCCACCTCCACCCCCTCTTAGTTCTTCCTTAGGTCCTAGTATAGTGCCGCCGCCGCCGCCACCACCCCCTTCTAATCTTGCTCCAGATGTTTCTCCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTTTGCAAATTCCGAATCCACCTTATGTCCAGGTGTTGTAACATCAACTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAATGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCTGCGGTAATACACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTTGGTATTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTACCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCGGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCTGGTGGAAGTTCAAATCGCCGAGCCTCAGGGCCGAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACTTGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACGAAGGAAGAAATAGAATTACTTAAGGGTTACAGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTCTTGGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGTTCGCAGGTCTCTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGATCAGAGGATCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGGTTCTACGAAGATACAACTTAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAATGATGGGCCCATTTCCGAATTTTTTTGCGGGACTTTAAAAGGCTTCCTCTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGCTGCCCTTTTGAGCAAGGCATTTGTTTGGAACCAGTTGTTTCTACACTGTTCAATTTCGTGCGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGAATATGAAAAAAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGGTCAATACCCCAAATAAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4251 44.06 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEEDYKVYIGGIVGQLRDSLTDASFMVFNFREGEGQSLITNILSVYDMTVMDYPRQYEGCPLLTMEMVHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMAPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLEKNQLLDLSFEKLISESETSEDIIGSPPLKIQTNQSQTSSELYHAASSVRSEVEPPELQVALQLSPQTKIITQRIPQPSLSTPVSFRSSVQGSPRPILRYHSAPSALGITALLHDHSKSSSNEVIHPVTISSPSSARLTRSVPDSPKDIQPSNLPILPLSLPLEPSSTLENSSTTKSTSTIPDPLSLHQLSLKPIKSSISQLSQTTPRGRSQLSPASLQPTPTFIPGKSPPSFNESLPSIASSSPLLRSSPSSCTKESFSIPTPPLSHLDSPSFVVTSPSCSRTNSSISPSPPQPSSTTLLLSSTKTSIPIVPQSSLSSDHLVSSQSPKKNLKIIPPPPPPPPPPPSCSSPNLGTSVVSPTSVPPPPPPPPPPSWKDSIITVMHDPPPPPPAPPLPPSSLSPTSTCGSGFTSLGPPPPPPPPPSLSPQDSTTIIRNLTVEPGPPPPPPPPPLSSSLGPSIVPPPPPPPPSNLAPDVSPTTHVSGPPPPPPPPFANSESTLCPGVVTSTPPAPPPPGFSMNGSATHAPPAPPPPGLCGNTLSNVNGTSSQSQVGINNSNIPSIPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGSSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDLALDVDQVENLIKFCPTKEEIELLKGYSGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRSQVSDLRNSLNTINSASEEIRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISEFFCGTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQGICLEPVVSTLFNFVRMFVRAHEENCKQLEYEKKKAQKEAAEKEKLKVNTPNKESGFLMQTPT 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4064488 4073268 + Lag0037184.1 Lac2g0546 597810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0546 1416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lac2g0546 1416 Gene3D - 196 341 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 524 554 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1044 1062 - -
Lac2g0546 1416 Coils Coil 1372 1399 - -
Lac2g0546 1416 SMART PTEN_C2_2 197 337 IPR014020 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 738 756 - -
Lac2g0546 1416 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 943 971 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 605 706 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 766 782 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1393 1416 - -
Lac2g0546 1416 Pfam Formin Homology 2 Domain 992 1353 IPR015425 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 985 999 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1044 1066 - -
Lac2g0546 1416 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Lac2g0546 1416 Gene3D Formin, FH2 domain 1009 1408 IPR042201 -
Lac2g0546 1416 ProSiteProfiles Formin homology-2 (FH2) domain profile. 990 1397 IPR015425 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 818 833 - -
Lac2g0546 1416 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Lac2g0546 1416 PANTHER FORMIN-J 1 1397 IPR051144 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 718 1002 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 524 591 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 570 591 - -
Lac2g0546 1416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 718 737 - -
Lac2g0546 1416 SMART it6_source 557 1413 IPR015425 -
Lac2g0546 1416 SUPERFAMILY Formin homology 2 domain (FH2 domain) 916 1391 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 845 902 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 789 806 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0546 K28090 - - csv:101214019 2055.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0118 Lac-Chr10:895096 Lac2g0546 Lac-Chr2:4064488 1.60E-253 dispersed
Lac2g0546 Lac-Chr2:4064488 Lac3g0591 Lac-Chr3:4581722 3.20E-246 dispersed
Lac11g2471 Lac-Chr11:40930121 Lac2g0546 Lac-Chr2:4064488 4.30E-258 transposed
Lac2g0546 Lac-Chr2:4064488 Lac3g0209 Lac-Chr3:1483722 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1726 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 4.6e-165 579.7
Lac9g1078 . 458 881 FH2 protein (formin) Gene Family AT3G25500 63.7 1.9e-142 504.6
Lac3g2794 . 493 894 FH2 protein (formin) Gene Family AT3G25500 51.2 2.0e-104 378.3
Lac11g2477 . 616 1074 FH2 protein (formin) Gene Family AT2G43800 60.5 1.0e-144 511.9
Lac9g1078 . 458 893 FH2 protein (formin) Gene Family AT2G43800 55.0 1.3e-123 441.8
Lac9g2080 . 291 645 FH2 protein (formin) Gene Family AT4G15200 52.4 3.8e-55 213.4
Lac2g1354 . 454 603 FH2 protein (formin) Gene Family AT4G15200 64.9 2.3e-47 187.6
Lac2g1354 . 458 905 FH2 protein (formin) Gene Family AT5G54650 67.5 2.5e-167 587.0
Lac9g2080 . 507 969 FH2 protein (formin) Gene Family AT5G54650 62.7 1.5e-159 561.2
Lac11g2477 . 627 1029 FH2 protein (formin) Gene Family AT5G54650 50.5 3.3e-103 374.0
Lac9g1078 . 8 900 FH2 protein (formin) Gene Family AT5G67470 57.6 9.5e-236 814.3
Lac11g2477 . 608 1072 FH2 protein (formin) Gene Family AT5G67470 58.8 1.2e-134 478.4
Lac13g1726 . 491 926 FH2 protein (formin) Gene Family AT5G67470 62.2 3.4e-132 470.3
Lac3g2794 . 491 896 FH2 protein (formin) Gene Family AT5G67470 51.0 7.8e-105 379.4
Lac13g0243 . 347 826 FH2 protein (formin) Gene Family AT1G59910 51.3 2.7e-124 444.1
Lac9g1078 . 482 858 FH2 protein (formin) Gene Family AT5G48360 50.1 4.7e-90 330.1
Lac2g1354 . 466 877 FH2 protein (formin) Gene Family AT3G05470 51.0 5.3e-106 383.3
Lac9g1078 . 462 857 FH2 protein (formin) Gene Family AT3G05470 51.2 7.7e-105 379.4
Lac11g2471 . 916 1227 FH2 protein (formin) Gene Family AT1G42980 50.5 7.4e-68 255.0
Lac11g2471 . 1 1234 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1222.2
Lac3g0591 . 1369 1690 FH2 protein (formin) Gene Family AT5G07650 73.9 2.0e-128 457.6
Lac10g0118 . 982 1270 FH2 protein (formin) Gene Family AT5G07650 70.2 1.4e-110 398.3
Lac2g0546 . 1072 1400 FH2 protein (formin) Gene Family AT5G07650 62.9 8.7e-108 389.0
Lac3g0209 . 935 1253 FH2 protein (formin) Gene Family AT5G07650 62.2 1.1e-107 388.7
Lac11g2471 . 900 1231 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lac3g0591 . 1296 1680 FH2 protein (formin) Gene Family AT5G07770 69.7 3.4e-141 499.6
Lac10g0118 . 903 1270 FH2 protein (formin) Gene Family AT5G07770 63.4 5.6e-120 429.1
Lac3g0209 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 1.1e-115 414.8
Lac2g0546 . 996 1392 FH2 protein (formin) Gene Family AT5G07770 57.3 1.9e-115 414.1
Lac11g2471 . 836 1225 FH2 protein (formin) Gene Family AT5G07770 55.8 5.5e-115 412.5
Lac2g0546 . 988 1400 FH2 protein (formin) Gene Family AT3G32400 75.8 7.2e-169 591.3
Lac3g0209 . 842 1255 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-147 519.6
Lac11g2471 . 836 1230 FH2 protein (formin) Gene Family AT3G32400 66.0 3.7e-141 499.2
Lac3g0591 . 1296 1690 FH2 protein (formin) Gene Family AT3G32400 65.5 4.9e-141 498.8
Lac10g0118 . 875 1263 FH2 protein (formin) Gene Family AT3G32400 59.2 2.7e-123 439.9
Lac2g0546 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 50.4 0.0e+00 1156.7
Lac3g0209 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 51.9 6.4e-293 1004.6
Lac3g0591 . 1297 1690 FH2 protein (formin) Gene Family AT5G07780 63.0 5.1e-124 442.2
Lac10g0118 . 906 1270 FH2 protein (formin) Gene Family AT5G07780 56.4 1.1e-102 371.3
Lac11g2471 . 837 1226 FH2 protein (formin) Gene Family AT5G07780 52.7 5.5e-102 369.0
Lac2g0546 . 997 1393 FH2 protein (formin) Gene Family AT5G07780 53.2 2.7e-101 366.7
Lac3g0209 . 865 1246 FH2 protein (formin) Gene Family AT5G07780 53.8 7.9e-101 365.2
Lac3g0591 . 1 1699 FH2 protein (formin) Gene Family AT5G07740 63.7 0.0e+00 1115.1
Lac3g0591 . 1368 1697 FH2 protein (formin) Gene Family AT5G07760 73.5 9.2e-127 452.2
Lac10g0118 . 981 1270 FH2 protein (formin) Gene Family AT5G07760 70.7 1.7e-109 394.8
Lac3g0209 . 934 1253 FH2 protein (formin) Gene Family AT5G07760 64.2 8.6e-109 392.5
Lac2g0546 . 1071 1408 FH2 protein (formin) Gene Family AT5G07760 62.9 4.3e-108 390.2
Lac11g2471 . 910 1231 FH2 protein (formin) Gene Family AT5G07760 61.3 3.1e-106 384.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42