Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0546 ATGGCCTTATTTCGCAAGTTCTTTTATCGGAAGCCACCGGACGGGCTTTTGGAGATATCCGAAAGGGTTTATGTTTTCGACTGCTGCTTTACAACGGAGGTTTTGGAAGAAGAGGATTATAAAGTCTATATTGGAGGCATTGTGGGACAACTTCGCGATAGTCTCACCGACGCTTCATTCATGGTGTTCAATTTCCGAGAGGGGGAGGGTCAAAGCCTGATTACAAATATATTATCTGTGTATGATATGACTGTCATGGACTATCCTCGACAATATGAAGGCTGCCCTCTACTCACTATGGAGATGGTCCACCACTTCTTAAGATCAAGTGAAAGCTGGCTCTCACTTGGGCAACAGAATGTACTTTTGATGCACTGTGAACGAGGGGGGTGGCCAGTCTTGGCGTTCATGTTGGCTGCTCTTCTGATTTACAGGAAGCAGTATGCTGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGGCACCTCTTAATCCATTGCCTTCACAATTGAGGTATCTTCAATATGTGTCAAGAAGAAATGTGGCATCAGAATGGCCTCCGCTTGACAGGGCGCTTACTCTAGACTGCATAATTATTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGACCAATATTTAGGATATATGGACAGGATCCTTTTATGGCTGCTGATCGAACTTCCAAAGTATTGTTCTCAACCCCCAAAAAGAGTAAACTTGTTCGTCAGTATAAGCAGGTAGATTGTGAACTAGTTAAAATTGATATCCATTGCCATATTCAAGGTGATGTTGTTCTTGAATGTATAAGTTTGGATAATGATCTGGAAAGGGAGGAGATGGTGTTTCGAGTTATGTTTAATACGGCATTTATAAGGTCAAATATTTTGATGCTTAACCGTGATGACATTGATATCCTATGGCATGCAAAGGATCAATTTCCAAAGGATTTCAGAGCAGAGGTTCTTTTCTCAGAGATGGATGCTAACGCATCACTTATTTCAATTGAATTGCCAAATATTGAGGAAAAAGATGGTCTTCCGATTGAAGCATTTGCTAGAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTAAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCAGAAAATAACAGCTTCGAATTTACTTCAAGAGAAACTGGTTAGTTCCGGTTCTTTAGAGAAAAACCAGTTGCTTGACTTATCTTTTGAAAAACTAATCTCGGAATCAGAGACATCTGAAGACATCATTGGAAGTCCCCCATTGAAGATACAAACAAATCAATCTCAGACTTCTTCCGAACTATATCATGCTGCAAGTTCAGTGAGATCAGAGGTTGAACCCCCAGAATTACAGGTTGCTCTCCAACTATCCCCTCAGACTAAAATCATTACCCAACGAATACCCCAACCTTCCTTGTCTACACCAGTTTCCTTCCGTAGTTCTGTGCAAGGTTCACCTCGCCCAATATTAAGATATCACAGTGCACCCTCAGCTCTTGGCATTACAGCTTTATTACACGATCATTCCAAATCAAGTAGTAACGAAGTCATACATCCAGTGACAATATCTTCACCATCATCTGCTCGCTTGACTAGAAGTGTTCCAGATTCACCTAAAGATATTCAACCCAGTAACCTTCCTATTTTGCCTCTCTCGCTGCCATTAGAGCCAAGTTCTACATTAGAAAATTCTTCCACCACCAAGTCAACTTCAACCATTCCTGATCCGTTGTCACTTCACCAACTTTCTTTGAAACCTATTAAATCTTCGATTTCTCAACTGTCTCAAACCACACCACGGGGGAGAAGTCAATTATCACCAGCTTCATTACAACCAACACCCACCTTTATTCCTGGGAAGTCCCCACCCTCTTTTAACGAGAGCTTACCTTCGATAGCCTCTTCTTCTCCTTTATTAAGATCATCCCCATCTTCCTGTACTAAGGAATCATTTTCCATTCCCACTCCTCCCCTCTCTCATCTTGATTCACCTTCATTTGTAGTAACATCTCCATCTTGTAGTAGGACGAACAGTTCAATTTCCCCATCTCCACCACAACCTTCGTCTACAACACTACTATTATCCTCTACAAAGACATCAATTCCAATTGTTCCTCAATCTTCTTTGTCCAGTGATCATCTAGTTTCTTCTCAGTCACCTAAAAAGAACTTGAAGATTATCCCACCCCCTCCCCCTCCCCCTCCCCCTCCTCCATCGTGTTCTAGCCCTAACTTGGGCACTAGTGTTGTCTCGCCAACATCGGTGCCCCCACCCCCACCTCCACCTCCACCTCCTTCATGGAAGGACTCTATAATCACTGTCATGCATGATCCCCCACCTCCACCTCCAGCCCCACCCTTGCCCCCATCTTCTTTGAGTCCAACATCTACTTGTGGTTCTGGTTTCACGTCTTTAGGGCCACCACCACCGCCACCACCTCCTCCTAGTCTGTCACCACAGGATTCTACCACGATAATTAGGAACTTGACGGTTGAACCTGGCCCTCCGCCTCCCCCACCTCCACCCCCTCTTAGTTCTTCCTTAGGTCCTAGTATAGTGCCGCCGCCGCCGCCACCACCCCCTTCTAATCTTGCTCCAGATGTTTCTCCAACAACGCATGTCTCTGGCCCCCCTCCTCCTCCTCCTCCACCTTTTGCAAATTCCGAATCCACCTTATGTCCAGGTGTTGTAACATCAACTCCACCTGCTCCACCTCCTCCAGGTTTTTCAATGAATGGTTCTGCAACACATGCTCCACCTGCACCCCCTCCTCCAGGTCTCTGCGGTAATACACTTTCAAATGTCAATGGTACTTCCTCACAGTCTCAAGTTGGTATTAATAACAGCAACATACCTTCTATTCCTGGACCACCTTCCAGTGCTCTATTCAATGCAAAGGGACGAGGCCTTGGACGTTTGAACTCCAAAAACCAGTCTCAACCTAAAAGGTCCAATTTGAAGCCTTACCACTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCTTATGGGCAGAGACACAAAAGACTGATGAAGCTTCCAAAGCTCCGGAGTTTGACATGTCGGAACTTGAAAGTCTTTTCTCTGCAGCTGCACCAAATTCAGACTCTGGAGGTTCTGGTGGAAGTTCAAATCGCCGAGCCTCAGGGCCGAAATCAGATAAAGTTCATTTGATTGAACTTCGACGGGCCTATAATTGCGAAATTATGCTCTCTAAAGTTAAGATTCCTTTGCCTGATATGATGTGTTCAGTCCTTGCATTGGATGACTTGGCATTAGATGTGGATCAGGTTGAGAACCTAATCAAGTTTTGTCCAACGAAGGAAGAAATAGAATTACTTAAGGGTTACAGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTCTTGGAATTGATGAAAGTCCCACGAGTAGAGTCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCGTTCGCAGGTCTCTGACCTTAGAAATAGTCTGAATACTATCAATTCGGCATCTGAAGAGATCAGAGGATCGGTAAAGTTGAAAAGGGTAATGCAAACTATCCTTTCGTTGGGTAATGCTTTGAACCACGGAACGGCTAGAGGTTCTGCTATTGGATTTCGGCTTGATAGTCTCCTCAAACTCACTGATACACGAGCCAGAAACAATAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTGCCAGAACTTTTAGATTTTCCAAAGGACCTTGTGAGTTTGGAAGGTTCTACGAAGATACAACTTAAATATTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGGCTAATTCAGAAAATGATGGGCCCATTTCCGAATTTTTTTGCGGGACTTTAAAAGGCTTCCTCTCTCATGCTGAGGCCGAAGTGAGGTCTCTTGCCTCTCTTTATTCTAATGTGGGTAGAAATGCTGATGCACTGGCTCTTTATTTCGGCGAGGATCCAGCACGCTGCCCTTTTGAGCAAGGCATTTGTTTGGAACCAGTTGTTTCTACACTGTTCAATTTCGTGCGGATGTTCGTGCGAGCGCATGAAGAAAACTGTAAGCAGCTTGAATATGAAAAAAAGAAAGCACAGAAGGAAGCAGCAGAAAAGGAGAAGTTGAAGGTCAATACCCCAAATAAGGAGTCAGGATTCTTGATGCAGACTCCAACCTAG 4251 44.06 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEEDYKVYIGGIVGQLRDSLTDASFMVFNFREGEGQSLITNILSVYDMTVMDYPRQYEGCPLLTMEMVHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYAGEQKTLDMIYKQAPRELLQLMAPLNPLPSQLRYLQYVSRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVDCELVKIDIHCHIQGDVVLECISLDNDLEREEMVFRVMFNTAFIRSNILMLNRDDIDILWHAKDQFPKDFRAEVLFSEMDANASLISIELPNIEEKDGLPIEAFARVQEIFSNVDWLSPKADAALNVLQKITASNLLQEKLVSSGSLEKNQLLDLSFEKLISESETSEDIIGSPPLKIQTNQSQTSSELYHAASSVRSEVEPPELQVALQLSPQTKIITQRIPQPSLSTPVSFRSSVQGSPRPILRYHSAPSALGITALLHDHSKSSSNEVIHPVTISSPSSARLTRSVPDSPKDIQPSNLPILPLSLPLEPSSTLENSSTTKSTSTIPDPLSLHQLSLKPIKSSISQLSQTTPRGRSQLSPASLQPTPTFIPGKSPPSFNESLPSIASSSPLLRSSPSSCTKESFSIPTPPLSHLDSPSFVVTSPSCSRTNSSISPSPPQPSSTTLLLSSTKTSIPIVPQSSLSSDHLVSSQSPKKNLKIIPPPPPPPPPPPSCSSPNLGTSVVSPTSVPPPPPPPPPPSWKDSIITVMHDPPPPPPAPPLPPSSLSPTSTCGSGFTSLGPPPPPPPPPSLSPQDSTTIIRNLTVEPGPPPPPPPPPLSSSLGPSIVPPPPPPPPSNLAPDVSPTTHVSGPPPPPPPPFANSESTLCPGVVTSTPPAPPPPGFSMNGSATHAPPAPPPPGLCGNTLSNVNGTSSQSQVGINNSNIPSIPGPPSSALFNAKGRGLGRLNSKNQSQPKRSNLKPYHWLKLTRAMQGSLWAETQKTDEASKAPEFDMSELESLFSAAAPNSDSGGSGGSSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMCSVLALDDLALDVDQVENLIKFCPTKEEIELLKGYSGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFRSQVSDLRNSLNTINSASEEIRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEGSTKIQLKYLAEEMQAISKGLEKVVQELANSENDGPISEFFCGTLKGFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQGICLEPVVSTLFNFVRMFVRAHEENCKQLEYEKKKAQKEAAEKEKLKVNTPNKESGFLMQTPT 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4064488 4073268 + Lag0037184.1 Lac2g0546 597810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0546 1416 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Lac2g0546 1416 Gene3D - 196 341 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 524 554 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1044 1062 - -
Lac2g0546 1416 Coils Coil 1372 1399 - -
Lac2g0546 1416 SMART PTEN_C2_2 197 337 IPR014020 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 738 756 - -
Lac2g0546 1416 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 943 971 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 605 706 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 766 782 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1393 1416 - -
Lac2g0546 1416 Pfam Formin Homology 2 Domain 992 1353 IPR015425 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 985 999 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 1044 1066 - -
Lac2g0546 1416 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Lac2g0546 1416 Gene3D Formin, FH2 domain 1009 1408 IPR042201 -
Lac2g0546 1416 ProSiteProfiles Formin homology-2 (FH2) domain profile. 990 1397 IPR015425 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 818 833 - -
Lac2g0546 1416 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Lac2g0546 1416 PANTHER FORMIN-J 1 1397 IPR051144 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 718 1002 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 524 591 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 570 591 - -
Lac2g0546 1416 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 718 737 - -
Lac2g0546 1416 SMART it6_source 557 1413 IPR015425 -
Lac2g0546 1416 SUPERFAMILY Formin homology 2 domain (FH2 domain) 916 1391 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 845 902 - -
Lac2g0546 1416 MobiDBLite consensus disorder prediction 789 806 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0118 Lac-Chr10:895096 Lac2g0546 Lac-Chr2:4064488 1.60E-253 dispersed
Lac2g0546 Lac-Chr2:4064488 Lac3g0591 Lac-Chr3:4581722 3.20E-246 dispersed
Lac11g2471 Lac-Chr11:40930121 Lac2g0546 Lac-Chr2:4064488 4.30E-258 transposed
Lac2g0546 Lac-Chr2:4064488 Lac3g0209 Lac-Chr3:1483722 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0546 K28090 - csv:101214019 2055.41