Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0548 ATGGAGGAGAGGCATGTTCTGTTTGGTAAATATGAGATTGGGAGGTTGCTTGGGAAGGGGACTTTTGCGAAGGTGTATTATGGAAAGGAATTGGAGTCTGGTGAAAGTGTGGCGATTAAGGTTTTAAATAAGGATCAGGTCAAGAAGGAAGGGATGATGGAGCAGATCAAGCGCGAGATCTCCGTTATGCGTCTTGTTCGTCATCCGAACATCGTTGAGTTGAAGGAAGTAATGGCGACGAAGACGAAGATCTTCTTCGTTATGGATTATGTTCGCGGCGGTGAGCTTTTTGCCAAGGTTGCTAGAGGAAAACTCAAGGAAGATGTGGCTCGGAAGTATTTCCAGCAGTTAATCAGCGCCGTCGATTACTGTCACAGTCGTGGAGTTTCTCACCGCGATTTGAAGCCGGAGAATCTGTTGCTGGATGAGAACGAAGATCTCAAGATCTCCGACTTTGGACTCTCCGCCTTACCGGAACAGCTTCGGAACGACGGCCTTCTCCACACGCAGTGCGGTACTCCGGCTTATGTCGCACCGGAAGTACTGAGAAGAAAGGGCTACGATGGGGCAAAAGCCGATATCTGGTCTTGCGGTGTGATTTTATATGTTCTGTTAGCAGGATTCCTTCCATTTCAGGATGAGAACATCATGACGATGTACAAGAAGGTTTTCAAGGCCGAGTTCGAATGTCCGCCATGGTTCTCCGCCGAATCGAAGCGTCTAATTTCAAAAATCCTGGTCGTAGATCCAGGAAGACGAATCACAATCGGAGCAATCACGCGAGTTCCTTGGTTCCGTAAAGATTTCTCGAGATCGCTCTCGTTCACGATGAAAGAAATAATCGCCGCGAAAACAGAGGATTCCGATTCCGAGAGTCCGAAACTATCGACGCCAAAATTCTTCAACGCGTTCGAGTTGATATCGTCGATGTCGTCCGGATTCGATCTATCGAGCTTATTCGAAAACAAAAGGAAGACAGGATCCATGTTCACATCGAGATGCTCGGTGTCGACGATCATGGAGAAGATCGAGACGGTGGCGAAGAAACTGAGCTTCAAGGTATCGGAAGTGAAAGACTTCAAGCTCCGGCTGCAAGGTGCGGCGGAAGGGCGAAAAGGAAAGCTGTCAGTGACGGCGGAGGTATTCGAGATAGCGCCGGAAGTTGCCATAGTCGAATTTTCAAAGTCGTCCGGCGATACTCTGGAATATTCCAAGTTCTGTGAAGAAGACGTTCGGCCAGCGCTGAAAGACATTGTTTGGACGTGGCAAGGCGATTGTGTCCCTAACGGTGACGGACGTAACGGCCAATTTGACGGTGACGGATTTTTCTGA 1332 48.72 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGESVAIKVLNKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYVRGGELFAKVARGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGAKADIWSCGVILYVLLAGFLPFQDENIMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPGRRITIGAITRVPWFRKDFSRSLSFTMKEIIAAKTEDSDSESPKLSTPKFFNAFELISSMSSGFDLSSLFENKRKTGSMFTSRCSVSTIMEKIETVAKKLSFKVSEVKDFKLRLQGAAEGRKGKLSVTAEVFEIAPEVAIVEFSKSSGDTLEYSKFCEEDVRPALKDIVWTWQGDCVPNGDGRNGQFDGDGFF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4094340 4095671 - Lag0037186.1 Lac2g0548 597812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0548 443 Pfam NAF domain 298 354 IPR004041 GO:0007165(InterPro)
Lac2g0548 443 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Lac2g0548 443 SUPERFAMILY Protein kinase-like (PK-like) 7 289 IPR011009 -
Lac2g0548 443 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0548 443 CDD CIPK_C 302 416 - -
Lac2g0548 443 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Lac2g0548 443 FunFam Non-specific serine/threonine protein kinase 4 298 - -
Lac2g0548 443 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Lac2g0548 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0548 443 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Lac2g0548 443 Gene3D Kinase associated domain 1, KA1 296 421 - -
Lac2g0548 443 FunFam Non-specific serine/threonine protein kinase 296 420 - -
Lac2g0548 443 CDD STKc_SnRK3 10 264 - -
Lac2g0548 443 ProSiteProfiles NAF domain profile. 296 321 IPR018451 GO:0007165(InterPro)
Lac2g0548 443 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0548 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac2g0548 443 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0548 Lac-Chr2:4094340 Lac9g2337 Lac-Chr9:42681407 8.20E-140 dispersed
Lac7g0833 Lac-Chr7:6714835 Lac2g0548 Lac-Chr2:4094340 6.70E-31 dispersed
Lac2g1835 Lac-Chr2:18324839 Lac2g0548 Lac-Chr2:4094340 3.60E-09 transposed
Lac11g0602 Lac-Chr11:6119699 Lac2g0548 Lac-Chr2:4094340 2.70E-175 wgd
Lac2g0548 Lac-Chr2:4094340 Lac3g0204 Lac-Chr3:1447243 4.00E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85982 PF00069 Pkinase 2.70E-74 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0548 - - - 0.0