Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0557 | ATGACGGTTGAGCCGAGAGTCGACGACCCAAATGACCAGTTTCCGGCTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAATCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGATCTACCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTCATGAAAGGGATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATCGAGGAGCTAAAAAACATTTGGCAGCATGTAATCAGGAGGAAGAAATTTGATCCAAAGGACCGGATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAATTATAGTGAAGATGATGACCAGGACTATAATGGGCAAGAGAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAATCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCCTTGACAGGACCTCCACAGTTCCCCAACACTGGTTATAGATCTATCCCAACTAGTGGGATGCTCGGTCGATTGAATACTCCTGCCTGTATGGGTATGCATGGCCTTTCTTCCCCAGGAACAGTTCAATTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGAAGTGGGAATATTTTCCGGGGGATGCCAGAGCCATCAGAACTTGATCAGCTACAACATGTTAAACATGGGACCCATGTGGACAATCTCTCTCCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTTCCAAATGCAAACATGTCTGCTGGTACTTTGAGTAATTCTCTTTTAGGATTAACGAACGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCTGTAGTATCTTCAAACTTGGAAAGTTCACGTCCTTCACTAGATAATGTTAGATGCACTGGTGACAATTGGTCGAAAGCTGCTCATTCATCTAGGATCCACTCGAATACTATTCCGTCTAGCAACCTTTCTAATATTGCTACTTCCTACCATAGCCAGTTGAGGGACAATACTACCAGTGCATTGCATATGGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCGAGGACAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGATTTGATCAAATAATCACAAAGGTTCCTCTTCAAGATTGGAATGATCATAAAGAGGATGCATATTACCACACAAATGTGGCCTGTAGCTCATCAAATTCTTTGATACCTGTGAATGGTTCTGCAGAGACATTACCCAAACATTTGGAAAATCAGAACACAATCTTCTCCGGAAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCCAAAGATGCAAGCTAGATTTTCTTCAAGTAACTGTGGCTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAGGAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACTTGCATGTGA | 2073 | 41.97 | MTVEPRVDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYSEDDDQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTGYRSIPTSGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSPAFDERTVFPASIGLPNANMSAGTLSNSLLGLTNDPLISEVQHHEVHGGRKFGPQSSISVVSSNLESSRPSLDNVRCTGDNWSKAAHSSRIHSNTIPSSNLSNIATSYHSQLRDNTTSALHMGNCLSDISSITSISTQSHDSRTDSQRQAATTSNRFDQIITKVPLQDWNDHKEDAYYHTNVACSSSNSLIPVNGSAETLPKHLENQNTIFSGSKDFNVTSQANVLDHAMVEHDQFKKSAMETSLMLKQGYLYDHQPKMQARFSSSNCGSLEDIACAMMKQEEDDGKLLEGDFGCDNYPIGTCM | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4210486 | 4214950 | - | Lag0037195.1 | Lac2g0557 | 597821 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0557 | 690 | Gene3D | - | 17 | 152 | - | - | |
Lac2g0557 | 690 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 198 | 251 | IPR006447 | GO:0003677(InterPro) | |
Lac2g0557 | 690 | MobiDBLite | consensus disorder prediction | 141 | 180 | - | - | |
Lac2g0557 | 690 | MobiDBLite | consensus disorder prediction | 141 | 197 | - | - | |
Lac2g0557 | 690 | SUPERFAMILY | CheY-like | 17 | 142 | IPR011006 | - | |
Lac2g0557 | 690 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160(InterPro) | |
Lac2g0557 | 690 | PIRSF | RR_ARR_type-B | 1 | 690 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Lac2g0557 | 690 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 195 | 254 | IPR017930 | - | |
Lac2g0557 | 690 | Gene3D | - | 194 | 257 | - | - | |
Lac2g0557 | 690 | FunFam | Two-component response regulator | 18 | 199 | - | - | |
Lac2g0557 | 690 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
Lac2g0557 | 690 | Pfam | Myb-like DNA-binding domain | 200 | 250 | IPR001005 | - | |
Lac2g0557 | 690 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 379 | IPR045279 | GO:0009736(InterPro) | |
Lac2g0557 | 690 | SUPERFAMILY | Homeodomain-like | 195 | 255 | IPR009057 | - | |
Lac2g0557 | 690 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160(InterPro) | |
Lac2g0557 | 690 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160(InterPro) | |
Lac2g0557 | 690 | FunFam | Two-component response regulator | 194 | 257 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g0905 | Lac-Chr11:9768244 | Lac2g0557 | Lac-Chr2:4210486 | 1.10E-84 | dispersed | |
Lac2g0557 | Lac-Chr2:4210486 | Lac6g2882 | Lac-Chr6:46483755 | 2.40E-114 | dispersed | |
Lac2g0557 | Lac-Chr2:4210486 | Lac3g0194 | Lac-Chr3:1367917 | 1.30E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23459 | PF00072 | Response_reg | 3.20E-23 | CL0304 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0557 | K14491 | - | csv:101215220 | 1264.98 |