Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0557 ATGACGGTTGAGCCGAGAGTCGACGACCCAAATGACCAGTTTCCGGCTGGAATGCGTGTTCTCGCCGTTGACGACGATCCCACTTGTCTTTTGATCTTGGAGACTTTGCTTCGTCGATGCCAGTATCATGTCACTACAACAAATCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAGAACAAGTTTGATGTGGTTATCAGTGATGTTCACATGCCTGACATGGATGGATTTAAGCTGCTAGAGCTTGTTGGACTGGAGATGGATCTACCTGTTATTATGCTGTCTGCAAATGGAGATCCCAAACTTGTCATGAAAGGGATTACTCATGGAGCATGTGATTACTTGCTGAAACCTGTTCGCATCGAGGAGCTAAAAAACATTTGGCAGCATGTAATCAGGAGGAAGAAATTTGATCCAAAGGACCGGATGAATTCTGGCAATCAGGACAGGCCTGATTCTGAGAATGGTGAAGAAGCAGCAGATCCAAATGGGAAATTTAATAAAAAAAGGAAGGACCAGAATTATAGTGAAGATGATGACCAGGACTATAATGGGCAAGAGAATGATGACTCATCAACCCAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTGCATAGGAAGTTTGTAAATGCTGTTAATCAGTTGGGCATAGACAAGGCAGTGCCTAAAAAGATTTTGGACTTGATGAACGTTGAAAAGCTCACAAGAGAAAATGTAGCTAGCCATCTCCAGAAATACAGGCTTTATCTCAAGAGAATCAGCTGTGTAGCAAACCAGCAAGCTAACATGGTGACTGCATTGAGCAGCGCAGATCCTTCCTATTTGAGAATTGGTTCTCTTAGTGGAATTGGGAATTTCCATTCCTTGACAGGACCTCCACAGTTCCCCAACACTGGTTATAGATCTATCCCAACTAGTGGGATGCTCGGTCGATTGAATACTCCTGCCTGTATGGGTATGCATGGCCTTTCTTCCCCAGGAACAGTTCAATTGGGTAATTTGAACAATTCAAGCAATGATCAGTCTACATTTCAGCCAATCATGCTTTCTGGAAACCGAAGTGGGAATATTTTCCGGGGGATGCCAGAGCCATCAGAACTTGATCAGCTACAACATGTTAAACATGGGACCCATGTGGACAATCTCTCTCCTGCTTTTGATGAGAGAACAGTATTTCCTGCTTCCATTGGCCTTCCAAATGCAAACATGTCTGCTGGTACTTTGAGTAATTCTCTTTTAGGATTAACGAACGATCCCTTGATTTCAGAAGTCCAGCATCATGAAGTGCATGGTGGTAGAAAATTTGGACCTCAATCTTCCATTTCTGTAGTATCTTCAAACTTGGAAAGTTCACGTCCTTCACTAGATAATGTTAGATGCACTGGTGACAATTGGTCGAAAGCTGCTCATTCATCTAGGATCCACTCGAATACTATTCCGTCTAGCAACCTTTCTAATATTGCTACTTCCTACCATAGCCAGTTGAGGGACAATACTACCAGTGCATTGCATATGGGAAATTGTCTTTCTGACATTTCTTCTATTACTTCAATATCTACTCAGTCCCATGATTCGAGGACAGATTCTCAACGTCAAGCAGCCACAACTAGCAACAGATTTGATCAAATAATCACAAAGGTTCCTCTTCAAGATTGGAATGATCATAAAGAGGATGCATATTACCACACAAATGTGGCCTGTAGCTCATCAAATTCTTTGATACCTGTGAATGGTTCTGCAGAGACATTACCCAAACATTTGGAAAATCAGAACACAATCTTCTCCGGAAGCAAGGATTTTAATGTGACTAGTCAAGCAAATGTTCTTGACCATGCAATGGTGGAACATGATCAATTCAAGAAATCAGCTATGGAGACATCACTCATGTTGAAACAAGGGTACCTGTATGATCATCAGCCAAAGATGCAAGCTAGATTTTCTTCAAGTAACTGTGGCTCCTTGGAAGATATAGCATGTGCAATGATGAAACAGGAGGAAGATGATGGAAAATTATTGGAAGGAGACTTTGGATGTGATAATTATCCCATTGGAACTTGCATGTGA 2073 41.97 MTVEPRVDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTNQAVMALKLLRENKNKFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDRMNSGNQDRPDSENGEEAADPNGKFNKKRKDQNYSEDDDQDYNGQENDDSSTQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLSGIGNFHSLTGPPQFPNTGYRSIPTSGMLGRLNTPACMGMHGLSSPGTVQLGNLNNSSNDQSTFQPIMLSGNRSGNIFRGMPEPSELDQLQHVKHGTHVDNLSPAFDERTVFPASIGLPNANMSAGTLSNSLLGLTNDPLISEVQHHEVHGGRKFGPQSSISVVSSNLESSRPSLDNVRCTGDNWSKAAHSSRIHSNTIPSSNLSNIATSYHSQLRDNTTSALHMGNCLSDISSITSISTQSHDSRTDSQRQAATTSNRFDQIITKVPLQDWNDHKEDAYYHTNVACSSSNSLIPVNGSAETLPKHLENQNTIFSGSKDFNVTSQANVLDHAMVEHDQFKKSAMETSLMLKQGYLYDHQPKMQARFSSSNCGSLEDIACAMMKQEEDDGKLLEGDFGCDNYPIGTCM 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4210486 4214950 - Lag0037195.1 Lac2g0557 597821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0557 690 Gene3D - 17 152 - -
Lac2g0557 690 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Lac2g0557 690 MobiDBLite consensus disorder prediction 141 180 - -
Lac2g0557 690 MobiDBLite consensus disorder prediction 141 197 - -
Lac2g0557 690 SUPERFAMILY CheY-like 17 142 IPR011006 -
Lac2g0557 690 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Lac2g0557 690 PIRSF RR_ARR_type-B 1 690 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Lac2g0557 690 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Lac2g0557 690 Gene3D - 194 257 - -
Lac2g0557 690 FunFam Two-component response regulator 18 199 - -
Lac2g0557 690 CDD REC_typeB_ARR-like 20 134 - -
Lac2g0557 690 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Lac2g0557 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 379 IPR045279 GO:0009736(InterPro)
Lac2g0557 690 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Lac2g0557 690 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Lac2g0557 690 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Lac2g0557 690 FunFam Two-component response regulator 194 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0905 Lac-Chr11:9768244 Lac2g0557 Lac-Chr2:4210486 1.10E-84 dispersed
Lac2g0557 Lac-Chr2:4210486 Lac6g2882 Lac-Chr6:46483755 2.40E-114 dispersed
Lac2g0557 Lac-Chr2:4210486 Lac3g0194 Lac-Chr3:1367917 1.30E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23459 PF00072 Response_reg 3.20E-23 CL0304 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0557 K14491 - csv:101215220 1264.98