Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0562 ATGGCCAGGCCTCAAAGGCGATATCGCGGAGTGAGACAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCATCCTCTGTTGAAGACGAGGATTTGGCTGGGGACCTTCGAGACGGCGGAGGATGCAGCGAGGGCTTACGATGAAGCTGCGAGGTTGATGTGTGGCCCAAAGGCAAGAACGAATTTCCCGTACGATCCGAATGCGATTCGTTCGTCGAATTCTAGGATTTTGTCGGCAAATTTGACTGCGAAATTGCACAGGAATTCCGCCGCCGTTTCCGCCGGCGCCGGTTTTGGTGGTGGGGCGAGTTCGGTGGTGGAGGAGATTAGACCGACGGCGGTGATGGCGGCGGAGCAAGCGCCGCGTGCGGCGGATTGGATGGTGAGAAGCGTGAAAATGGAAAGTGAATTTGGGGAACTGAAATTGTTGGAAGATGATCACATTGAGCAAATGATTGAGGAGCTTCTTTATTATGGATCCATGGAGTTTTGTTTGTGA 501 53.09 MARPQRRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYDPNAIRSSNSRILSANLTAKLHRNSAAVSAGAGFGGGASSVVEEIRPTAVMAAEQAPRAADWMVRSVKMESEFGELKLLEDDHIEQMIEELLYYGSMEFCL 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4252667 4253308 - Lag0037200.1 Lac2g0562 597826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0562 166 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 110 IPR050913 -
Lac2g0562 166 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 CDD AP2 7 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Lac2g0562 166 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Lac2g0562 166 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0562 166 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0562 Lac-Chr2:4252667 Lac6g0608 Lac-Chr6:5165481 1.90E-49 dispersed
Lac11g0615 Lac-Chr11:6312121 Lac2g0562 Lac-Chr2:4252667 9.00E-32 wgd
Lac2g0562 Lac-Chr2:4252667 Lac4g2752 Lac-Chr4:46384071 1.70E-37 wgd
Lac2g0562 Lac-Chr2:4252667 Lac6g0607 Lac-Chr6:5159312 3.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23461 PF00847 AP2 6.70E-12 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0562 - - - 0.0