Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0570 ATGGCCTATCACAATCACCTCTCTCACGACCTTCCCCTCCACTTTTCCGACCAGCAACAGCACCAGAATCAGCCTCTCTCTGACAGCTCCTTGCGTACCATTTTGCCGGACCAGCTCGCCGGCGCCCACTCCTCGCCGGACCCCAAGTCCCACCACCATCACCATCCGCTGCAGACGGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCTACCACTGCCGCCGCTGCCGCGGCGGCGGCGGCGAACAACGCCAATACTAATTTCCTCAACCTTCACACCACTGCATCCGATTCCGCCGTGTCTCACTCATCTAACCAATGGCTCTCCCGGCCGATCCTCCATCGAAACCACAGCGATGTCATCGACGATGTCGCCGCCGCTGCTGGCGACGCTATGATCGGTGCCGCTACCGCTGCGCTCTCTCATGATTCCGGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAAGAGCGAGGGTATGGTGATGGAACCTGGCGGCGGTGGAGACGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGGCGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCGACGCCCGTCGACCAATTGCCGAGGATTGACGCTCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCGGCCTTGGGCCACACTGCTCCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACAGGAGCAACAATGTCGGACGACGATGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGACATAAGGGAAGAGATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGCGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGATTCATTTATGGTCTTTTGTAG 1395 52.47 MAYHNHLSHDLPLHFSDQQQHQNQPLSDSSLRTILPDQLAGAHSSPDPKSHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAAAAAAAAANNANTNFLNLHTTASDSAVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGGGGDGVLNWQHARYKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRFIYGLL 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4305795 4310632 + Lag0037208.1 Lac2g0570 597834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0570 464 ProSiteProfiles ELK domain profile. 361 381 IPR005539 GO:0003677(InterPro)
Lac2g0570 464 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 443 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac2g0570 464 CDD homeodomain 384 445 IPR001356 GO:0003677(InterPro)
Lac2g0570 464 SMART KNOX1_2 193 237 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0570 464 FunFam homeobox protein knotted-1-like 3 isoform X1 382 443 - -
Lac2g0570 464 Pfam ELK domain 361 382 IPR005539 GO:0003677(InterPro)
Lac2g0570 464 Gene3D - 382 443 - -
Lac2g0570 464 MobiDBLite consensus disorder prediction 303 322 - -
Lac2g0570 464 SMART KNOX2_2 249 304 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0570 464 Pfam KNOX2 domain 253 303 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0570 464 ProSiteProfiles 'Homeobox' domain profile. 381 444 IPR001356 GO:0003677(InterPro)
Lac2g0570 464 MobiDBLite consensus disorder prediction 39 59 - -
Lac2g0570 464 Pfam KNOX1 domain 195 236 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0570 464 Pfam Homeobox KN domain 401 440 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac2g0570 464 SMART HOX_1 383 448 IPR001356 GO:0003677(InterPro)
Lac2g0570 464 SUPERFAMILY Homeodomain-like 383 447 IPR009057 -
Lac2g0570 464 SMART ELK_2 361 382 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0570 Lac-Chr2:4305795 Lac6g2534 Lac-Chr6:43116099 4.70E-29 dispersed
Lac2g0570 Lac-Chr2:4305795 Lac2g0572 Lac-Chr2:4316365 3.10E-222 proximal
Lac11g2153 Lac-Chr11:37576346 Lac2g0570 Lac-Chr2:4305795 1.20E-102 transposed
Lac2g0570 Lac-Chr2:4305795 Lac6g0614 Lac-Chr6:5232142 2.00E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23462 PF03791 KNOX2 1.90E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0570 - - - 0.0