Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0570 | ATGGCCTATCACAATCACCTCTCTCACGACCTTCCCCTCCACTTTTCCGACCAGCAACAGCACCAGAATCAGCCTCTCTCTGACAGCTCCTTGCGTACCATTTTGCCGGACCAGCTCGCCGGCGCCCACTCCTCGCCGGACCCCAAGTCCCACCACCATCACCATCCGCTGCAGACGGCCCCGAATTGGCTCAACAACGCACTGCTTCGAAACCAAAACCCCCATTCTCACTACTCTACCGACACCGCTACCACTGCCGCCGCTGCCGCGGCGGCGGCGGCGAACAACGCCAATACTAATTTCCTCAACCTTCACACCACTGCATCCGATTCCGCCGTGTCTCACTCATCTAACCAATGGCTCTCCCGGCCGATCCTCCATCGAAACCACAGCGATGTCATCGACGATGTCGCCGCCGCTGCTGGCGACGCTATGATCGGTGCCGCTACCGCTGCGCTCTCTCATGATTCCGGCGACCTGAAGAACGACGCCAATAGCGGCGACGGGTTGAACAAGAGCGAGGGTATGGTGATGGAACCTGGCGGCGGTGGAGACGGGGTTTTGAATTGGCAACATGCTCGTTACAAAGGCGAGATTCTCGCTCATCCTCTTTATGAACAGCTTCTTTCCGCTCATGTTGCTTGTCTTCGCATCGCGACGCCCGTCGACCAATTGCCGAGGATTGACGCTCAGCTCGCTCAGTCTCAGAATGTTGTCGCTAAGTACTCGGCCTTGGGCCACACTGCTCCGCCCATGGTTGGCGATGACAAAGAGCTCGATCAGTTCATGACGCATTATGTTCTTCTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGCTGGGACATTGAGCAGTCCCTACAAAGCTTAACAGGAGTTTCACCCGGTGAAGGTACAGGAGCAACAATGTCGGACGACGATGACGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTTAGAGGGTCCAGACACCATGGGATTTGGCCCTCTTATTCCCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGGGTTACAAGGAGAAAATTGTGGACATAAGGGAAGAGATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGCGGAAGCGAAACTGGCACAGCAATCCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGATTCATTTATGGTCTTTTGTAG | 1395 | 52.47 | MAYHNHLSHDLPLHFSDQQQHQNQPLSDSSLRTILPDQLAGAHSSPDPKSHHHHHPLQTAPNWLNNALLRNQNPHSHYSTDTATTAAAAAAAAANNANTNFLNLHTTASDSAVSHSSNQWLSRPILHRNHSDVIDDVAAAAGDAMIGAATAALSHDSGDLKNDANSGDGLNKSEGMVMEPGGGGDGVLNWQHARYKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHTAPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQVDSDANLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRFIYGLL | 464 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4305795 | 4310632 | + | Lag0037208.1 | Lac2g0570 | 597834 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0570 | 464 | ProSiteProfiles | ELK domain profile. | 361 | 381 | IPR005539 | GO:0003677(InterPro) | |
Lac2g0570 | 464 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 124 | 443 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac2g0570 | 464 | CDD | homeodomain | 384 | 445 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0570 | 464 | SMART | KNOX1_2 | 193 | 237 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0570 | 464 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 382 | 443 | - | - | |
Lac2g0570 | 464 | Pfam | ELK domain | 361 | 382 | IPR005539 | GO:0003677(InterPro) | |
Lac2g0570 | 464 | Gene3D | - | 382 | 443 | - | - | |
Lac2g0570 | 464 | MobiDBLite | consensus disorder prediction | 303 | 322 | - | - | |
Lac2g0570 | 464 | SMART | KNOX2_2 | 249 | 304 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0570 | 464 | Pfam | KNOX2 domain | 253 | 303 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0570 | 464 | ProSiteProfiles | 'Homeobox' domain profile. | 381 | 444 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0570 | 464 | MobiDBLite | consensus disorder prediction | 39 | 59 | - | - | |
Lac2g0570 | 464 | Pfam | KNOX1 domain | 195 | 236 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Lac2g0570 | 464 | Pfam | Homeobox KN domain | 401 | 440 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Lac2g0570 | 464 | SMART | HOX_1 | 383 | 448 | IPR001356 | GO:0003677(InterPro) | |
Lac2g0570 | 464 | SUPERFAMILY | Homeodomain-like | 383 | 447 | IPR009057 | - | |
Lac2g0570 | 464 | SMART | ELK_2 | 361 | 382 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0570 | Lac-Chr2:4305795 | Lac6g2534 | Lac-Chr6:43116099 | 4.70E-29 | dispersed | |
Lac2g0570 | Lac-Chr2:4305795 | Lac2g0572 | Lac-Chr2:4316365 | 3.10E-222 | proximal | |
Lac11g2153 | Lac-Chr11:37576346 | Lac2g0570 | Lac-Chr2:4305795 | 1.20E-102 | transposed | |
Lac2g0570 | Lac-Chr2:4305795 | Lac6g0614 | Lac-Chr6:5232142 | 2.00E-184 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23462 | PF03791 | KNOX2 | 1.90E-21 | No_clan | Lac | TF |
Pathway information
