Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0572 ATGGCCTATCACAATCACCTCTCTCACGACCTTCCCCTCCACTTTTCTGACCAACAACACCACCACAATCAACCTCTCTCCGACACCTCCTTCCGCACCATTTTGCCGGACCAGCTCGCCGCCGCCCACTCCTCGCCGGACCCCAAATCCCACCACCATCACCATCCGCTGCAGACGCCCGCCCCGAATTGGCTCAACAACGCACTGCTTCGCAACCAAAACCCCCATTCTCACTACTCTACCGGCACCGCCGCTGCTGCTGCGCCGGCGGCGAATAATGCCAATGGTAATTTCCTCAACCTCCAAACCGCTGCATCCGATTCCGCCGTGTCTCACTCATCTAACCAACAGTTCTCCCGCTTGATCCTCCATCGAAACCATAGCGATGTCATCGATGACGTCGCCTCTCACGATTCCAGCGACCTGAAGAACGACGCCAACAGCGGCGACGGGTTGAACAAGAGCGAGGGTATGGCGATGGAACCTGGCGGCGGTGGAGACGGGGTTTTGAATTGGCAACATGCTCGTTACAAGGGCGAGATTCTCGCTCATCCTATTTATGAACAGCTTGTTTCCGCTCATGTGGCTTGTCTTCGCATCGCAACGCCCGTCGACCAGTTGCCGAGGATTGACGCTCAGCTTGCTCGGTCTCAGAATGTCGTCGCTAAGTACTCGGCCTTGGGCCATACTTCTCCGCCCATGGCTGGCGATGACAGAGAGCTCGATCAGTTCATGACGCATTACGTTCTTTTGCTTTGTTCATTCAAAGAACAACTCCAACAACATGTTCAGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGACATTGAGCAGTCTCTACAAAGCTTAATAGGAGTTTCACTTGGAGAAGGTACAGGAGCGACAATGTCGGACGACGACGAGGACCAGGTCGACAGTGATGCAAATTTGTTTGATGGGAGTTCAGAGGGTCCAGACACCTTGGGATTTGGCCCTCTTATTCTCACAGAGAGTGAGAGGTCCTTGATGGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAAGCGAGTTACAAGGAGAAAATTGTGGATATAAGGGAAGAGATTCTGAGAAAGAGGAGAGCTGGAAAACTCCCTGGTGATACCACCTCTGTCCTCAAACAATGGTGGCAATCACATTCAAAGTGGCCTTATCCAACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTGCAACTGAAACAGATAAACAATTGGTTCATTAACCAGAGGAAGCGAAACTGGCACAGCAATCCTTCAAGCTCTACAAACTTGAAAAGCAAACGCAAAAGGAGCTTTTCTTCTCTTTCAACACATCATCTCAAGAGCTTGACTAGATTTTCGGCAATGCAATATGTTATGGATGGAAAACTGGACGAGGATGGGGACGGAGAAATATGTTGTGTGGCGGGCAAGCGTAAAGATCGAAAAGTCGTTCATACATATTTCAAGATGGATAAGAATTACCACCGGGTTAGATAG 1509 50.36 MAYHNHLSHDLPLHFSDQQHHHNQPLSDTSFRTILPDQLAAAHSSPDPKSHHHHHPLQTPAPNWLNNALLRNQNPHSHYSTGTAAAAAPAANNANGNFLNLQTAASDSAVSHSSNQQFSRLILHRNHSDVIDDVASHDSSDLKNDANSGDGLNKSEGMAMEPGGGGDGVLNWQHARYKGEILAHPIYEQLVSAHVACLRIATPVDQLPRIDAQLARSQNVVAKYSALGHTSPPMAGDDRELDQFMTHYVLLLCSFKEQLQQHVQVHAMEAVMACWDIEQSLQSLIGVSLGEGTGATMSDDDEDQVDSDANLFDGSSEGPDTLGFGPLILTESERSLMERVRQELKHELKASYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTNLKSKRKRSFSSLSTHHLKSLTRFSAMQYVMDGKLDEDGDGEICCVAGKRKDRKVVHTYFKMDKNYHRVR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4316365 4321128 + Lag0037210.1 Lac2g0572 597836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0572 502 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac2g0572 502 SMART KNOX2_2 231 286 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0572 502 SMART HOX_1 365 430 IPR001356 GO:0003677(InterPro)
Lac2g0572 502 FunFam homeobox protein knotted-1-like 3 isoform X1 364 425 - -
Lac2g0572 502 SMART KNOX1_2 175 219 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0572 502 SUPERFAMILY Homeodomain-like 365 430 IPR009057 -
Lac2g0572 502 MobiDBLite consensus disorder prediction 40 63 - -
Lac2g0572 502 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 427 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac2g0572 502 Pfam KNOX1 domain 177 217 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0572 502 ProSiteProfiles ELK domain profile. 343 363 IPR005539 GO:0003677(InterPro)
Lac2g0572 502 Gene3D - 364 425 - -
Lac2g0572 502 MobiDBLite consensus disorder prediction 135 164 - -
Lac2g0572 502 CDD homeodomain 366 427 IPR001356 GO:0003677(InterPro)
Lac2g0572 502 Pfam KNOX2 domain 236 284 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac2g0572 502 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0572 Lac-Chr2:4316365 Lac6g0614 Lac-Chr6:5232142 1.70E-162 dispersed
Lac2g0570 Lac-Chr2:4305795 Lac2g0572 Lac-Chr2:4316365 3.10E-222 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23463 PF03791 KNOX2 2.30E-20 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0572 - - - 0.0