Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0610 | ATGTTCTTCGTGTGTTTTTTTCTTTGTAGGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGAAGAAGCCAGCCAAGGCCATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCTGAGCTACTCAGCACCAAGCTCAGAAAATGCTGCAAGAACCCCTCTCCCTCCTTGACATGCCTGCGGCTCGACAGCGACAACGCCCACATCGGCGTCTGGCAGAAGCGCGCAGGCACTCGAGCAGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACTGTCGCCGTCCCCGTCGCCATCGCCATCGCCCGAATTGGCTAGCCAGGAAGCCGATGGCCATCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAA | 534 | 52.06 | MFFVCFFLCRKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASQGHGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETLSPSPSPSPSPELASQEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS | 177 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4591556 | 4592089 | + | Lag0037248.1 | Lac2g0610 | 597874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0610 | 177 | CDD | AP2 | 11 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0610 | 177 | Gene3D | AP2/ERF domain | 8 | 48 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0610 | 177 | SUPERFAMILY | DNA-binding domain | 8 | 48 | IPR016177 | GO:0003677(InterPro) | |
Lac2g0610 | 177 | MobiDBLite | consensus disorder prediction | 124 | 156 | - | - | |
Lac2g0610 | 177 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 10 | 123 | IPR050913 | - | |
Lac2g0610 | 177 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0610 | 177 | SMART | rav1_2 | 9 | 52 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0610 | 177 | MobiDBLite | consensus disorder prediction | 42 | 67 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0610 | Lac-Chr2:4591556 | Lac6g0607 | Lac-Chr6:5159312 | 1.30E-11 | dispersed | |
Lac11g0681 | Lac-Chr11:7060658 | Lac2g0610 | Lac-Chr2:4591556 | 2.10E-31 | wgd | |
Lac2g0610 | Lac-Chr2:4591556 | Lac3g0807 | Lac-Chr3:6412484 | 3.20E-42 | wgd | |
Lac2g0610 | Lac-Chr2:4591556 | Lac6g2931 | Lac-Chr6:46959924 | 5.40E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23465 | PF00847 | AP2 | 2.60E-07 | CL0081 | Lac | TF |
Pathway information
