Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0610 ATGTTCTTCGTGTGTTTTTTTCTTTGTAGGAAGAGAAGGGTGTGGCTGGGGACATTCGACACAGCAGAGGATGCAGCACGAGCGTATGATCAAGCAGCCATCTTGATGAACGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGAAGAAGCCAGCCAAGGCCATGGATCTTCTCCATTGTCCCCAAAAGCACTTTCTGAGCTACTCAGCACCAAGCTCAGAAAATGCTGCAAGAACCCCTCTCCCTCCTTGACATGCCTGCGGCTCGACAGCGACAACGCCCACATCGGCGTCTGGCAGAAGCGCGCAGGCACTCGAGCAGCCTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAGGAGACACTGTCGCCGTCCCCGTCGCCATCGCCATCGCCCGAATTGGCTAGCCAGGAAGCCGATGGCCATCGGAATGGAATTGATGAAGAAGACAGAATTGCAATGCAAATGATTGAAGAGTTGCTCAATTGGAACTGCCCTCTTCCTTCAACTTCAAGCTAA 534 52.06 MFFVCFFLCRKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASQGHGSSPLSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDNAHIGVWQKRAGTRAASNWVMRIELGKKETLSPSPSPSPSPELASQEADGHRNGIDEEDRIAMQMIEELLNWNCPLPSTSS 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4591556 4592089 + Lag0037248.1 Lac2g0610 597874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0610 177 CDD AP2 11 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0610 177 Gene3D AP2/ERF domain 8 48 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0610 177 SUPERFAMILY DNA-binding domain 8 48 IPR016177 GO:0003677(InterPro)
Lac2g0610 177 MobiDBLite consensus disorder prediction 124 156 - -
Lac2g0610 177 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 123 IPR050913 -
Lac2g0610 177 ProSiteProfiles AP2/ERF domain profile. 1 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0610 177 SMART rav1_2 9 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0610 177 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0610 Lac-Chr2:4591556 Lac6g0607 Lac-Chr6:5159312 1.30E-11 dispersed
Lac11g0681 Lac-Chr11:7060658 Lac2g0610 Lac-Chr2:4591556 2.10E-31 wgd
Lac2g0610 Lac-Chr2:4591556 Lac3g0807 Lac-Chr3:6412484 3.20E-42 wgd
Lac2g0610 Lac-Chr2:4591556 Lac6g2931 Lac-Chr6:46959924 5.40E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23465 PF00847 AP2 2.60E-07 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0610 - - - 0.0