Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0618 ATGAGAACTCGCCACGTCATTAACTACCAAAGTATCTCAAAACCCCGTGGCTTACTGAGCCGAGCCGAGCCGTTTAGAGCACAATGGAAACCAGTCGATCCGATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGTGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCTGTTTGTCGTCCGTGTTATGAGTATGAGCGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGAGTTGATGGTGATGACGATGAGGATGATGTTGATGACATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCGAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTTACCAATGGGCAATCAGTGTCGGGTGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAACATATGCACTCACATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTGGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTAAAACAAGAGAAAAATATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAAGGGACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTGAGTCGTGTGGTTCCGATTCCATCCTCTCACTTGACCCCGTACCGTGTTGTGATCATACTTCGACTTATTATTCTGGGCTTTTTCTTACAGTACCGTTTGACGCACCCTGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCTTATCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTCGAGAGACTCGCGCTAAGATATGATCGCGAAGGAGAACCATCACAATTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCGCTCATCACAGCAAACACTGTGCTTTCCATCCTCGCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCTATGCTTACTTTCGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTACCCTTTTGCAAGAAGCACAACATCGAACCAAGGGCCCCCGAATTCTATTTTGCTCAAAAAATAGACTACTTAAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGCGCCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGACCAATGCGCTTGTTGCCAAAGCACAGAAGATGCCTGAAGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCTAGGGATCATCCTGGAATGATTCAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCACCACAAAAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCAGCCGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTGCAGTTCCCACAACGTTTTGACGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTCTATATGGTTATGATCCGGTTCTGACCGAGGCAGACTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGAACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAAAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAAGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGTTGGATATCAATTTACTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTCTGAACCAAGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGAAGGCTAAAACTTTTGGAGAGAATAGCATACATCAATACCATCGTCTACCCTATCACCTCAATTCCACTTATTGCATACTGTATGCTTCCTGCTTTCTGTCTTTTGACTGGAAAGTTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACTGGTATTCTTGAACTTAGGTGGAGTGGGGTTAGCATTGAAGACTGGTGGAGAAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCGGTGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCAACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCATATGCCATTAACAGTGGGTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACGCCCACAATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCCTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCCTCAACAAAGGCTGCCAATGGTCAATGTGGCATCAATTGCTAG 3351 45.42 MRTRHVINYQSISKPRGLLSRAEPFRAQWKPVDPMEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKAKRQWHGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRTNALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAGDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4644374 4650659 - Lag0037256.1 Lac2g0618 597882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0618 1116 CDD mRING-HC-C4C4_CesA 71 121 - -
Lac2g0618 1116 SUPERFAMILY Nucleotide-diphospho-sugar transferases 410 683 IPR029044 -
Lac2g0618 1116 SUPERFAMILY RING/U-box 56 145 - -
Lac2g0618 1116 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 550 687 IPR029044 -
Lac2g0618 1116 Pfam Zinc-binding RING-finger 63 140 IPR027934 -
Lac2g0618 1116 MobiDBLite consensus disorder prediction 195 227 - -
Lac2g0618 1116 MobiDBLite consensus disorder prediction 109 177 - -
Lac2g0618 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 146 IPR013083 -
Lac2g0618 1116 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 299 1085 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac2g0618 1116 FunFam Cellulose synthase 55 146 - -
Lac2g0618 1116 FunFam Cellulose synthase 509 683 - -
Lac2g0618 1116 Pfam Cellulose synthase 392 1107 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac2g0618 1116 ProSiteProfiles Zinc finger RING-type profile. 73 119 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0618 Lac-Chr2:4644374 Lac4g2655 Lac-Chr4:45532891 0.00E+00 dispersed
Lac2g0618 Lac-Chr2:4644374 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0618 K10999 - csv:101205724 2196.39