Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0618 | ATGAGAACTCGCCACGTCATTAACTACCAAAGTATCTCAAAACCCCGTGGCTTACTGAGCCGAGCCGAGCCGTTTAGAGCACAATGGAAACCAGTCGATCCGATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGGAATGAGCTTGTTCGGATTCGCCACGATTCCGATAGTGGGCCTAAACCTCTGAAGAATTTAAACAGCCAAACATGTCAAATATGTGGTGACACAGTTGGTCTTACGGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCCTTTCCTGTTTGTCGTCCGTGTTATGAGTATGAGCGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGAGTTGATGGTGATGACGATGAGGATGATGTTGATGACATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCGAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACATGAGTCTCAACAGCCTATACCACTCCTTACCAATGGGCAATCAGTGTCGGGTGAAATTCCTTGTGCTACCCCTGACAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAACATATGCACTCACATCCATATGTTGACCCACGGCAGCCAGTTCCTGTGAGAATTGTGGACCCATCAAAGGATTTGAACTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGAGTGGAAGGTTGGAAACTAAAACAAGAGAAAAATATGATGCAGATGACAAGTAGGTACACTGAAGGGAAGGGGGACATGGAAGGGACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTCTGAGTCGTGTGGTTCCGATTCCATCCTCTCACTTGACCCCGTACCGTGTTGTGATCATACTTCGACTTATTATTCTGGGCTTTTTCTTACAGTACCGTTTGACGCACCCTGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCTTATCCTGGCTTCTGGATCAGTTTCCAAAATGGTCTCCTGTCAATCGTGAGACCTTCCTCGAGAGACTCGCGCTAAGATATGATCGCGAAGGAGAACCATCACAATTAGCTCCTGTTGATGTCTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCGCTCATCACAGCAAACACTGTGCTTTCCATCCTCGCTGTGGACTACCCAGTGGACAAAGTCTCCTGCTATGTATCAGATGATGGTTCAGCTATGCTTACTTTCGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTACCCTTTTGCAAGAAGCACAACATCGAACCAAGGGCCCCCGAATTCTATTTTGCTCAAAAAATAGACTACTTAAAGGACAAGATTAAACCTTCTTTTGTCAAAGAGCGCCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGGACCAATGCGCTTGTTGCCAAAGCACAGAAGATGCCTGAAGAAGGTTGGACCATGCAGGATGGAACGCCATGGCCAGGAAACAATCCTAGGGATCATCCTGGAATGATTCAGGTTTTCTTAGGCCACAGTGGAGGTCTTGATACTGATGGCAATGAACTACCACGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCACCACAAAAAAGCCGGAGCCATGAATGCATTGATCCGAGTTTCAGCCGTGCTTACTAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTTAACAACAGCAAAGCTCTGAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTGCAGTTCCCACAACGTTTTGACGGCATTGATTTGCACGATCGATATGCCAATCGCAACATTGTCTTTTTCGACATAAACTTGAAAGGGTTGGATGGCCTCCAGGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATCGGCAAGCTCTATATGGTTATGATCCGGTTCTGACCGAGGCAGACTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAGGAACAAGAAGTACATCGACAAAAAGAGGGCTGCAAAGAGAACTGAGTCTACCATTCCTATCTTTAATATGGAAGATATTGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAAAAGCGCTTTGGCCAATCTCCAGTTTTCATTGCAGCCACTTTCATGGAACAGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAAGAAGCAATTCATGTCATCAGTTGTGGGTATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATTTTGACTGGGTTTAAGATGCATGCTCGCGGTTGGATATCAATTTACTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGTCTGAACCAAGTGCTTCGATGGGCTTTGGGTTCCATAGAAATCTTGCTCAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGAAGGCTAAAACTTTTGGAGAGAATAGCATACATCAATACCATCGTCTACCCTATCACCTCAATTCCACTTATTGCATACTGTATGCTTCCTGCTTTCTGTCTTTTGACTGGAAAGTTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTCCTTTTCGTCTCCATCTTTGCAACTGGTATTCTTGAACTTAGGTGGAGTGGGGTTAGCATTGAAGACTGGTGGAGAAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTCGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTGACGTCAAAGGCCGGTGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCAACCACTGTCCTTATTATGAATATGGTTGGTATAGTGGCAGGTGTTTCATATGCCATTAACAGTGGGTACCAGTCTTGGGGTCCTCTCTTTGGTAAGCTGTTCTTTGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACGCCCACAATTGTCATTGTCTGGTCCATTCTCCTCGCTTCCATTTTCTCCCTGCTCTGGGTGCGAATCGATCCATTCACCTCGGCCTCAACAAAGGCTGCCAATGGTCAATGTGGCATCAATTGCTAG | 3351 | 45.42 | MRTRHVINYQSISKPRGLLSRAEPFRAQWKPVDPMEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNLNSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKAKRQWHGEDAELSTSARHESQQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRTNALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAGDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC | 1116 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4644374 | 4650659 | - | Lag0037256.1 | Lac2g0618 | 597882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0618 | 1116 | CDD | mRING-HC-C4C4_CesA | 71 | 121 | - | - | |
Lac2g0618 | 1116 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 410 | 683 | IPR029044 | - | |
Lac2g0618 | 1116 | SUPERFAMILY | RING/U-box | 56 | 145 | - | - | |
Lac2g0618 | 1116 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 550 | 687 | IPR029044 | - | |
Lac2g0618 | 1116 | Pfam | Zinc-binding RING-finger | 63 | 140 | IPR027934 | - | |
Lac2g0618 | 1116 | MobiDBLite | consensus disorder prediction | 195 | 227 | - | - | |
Lac2g0618 | 1116 | MobiDBLite | consensus disorder prediction | 109 | 177 | - | - | |
Lac2g0618 | 1116 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 146 | IPR013083 | - | |
Lac2g0618 | 1116 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 299 | 1085 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lac2g0618 | 1116 | FunFam | Cellulose synthase | 55 | 146 | - | - | |
Lac2g0618 | 1116 | FunFam | Cellulose synthase | 509 | 683 | - | - | |
Lac2g0618 | 1116 | Pfam | Cellulose synthase | 392 | 1107 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lac2g0618 | 1116 | ProSiteProfiles | Zinc finger RING-type profile. | 73 | 119 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0618 | Lac-Chr2:4644374 | Lac4g2655 | Lac-Chr4:45532891 | 0.00E+00 | dispersed | |
Lac2g0618 | Lac-Chr2:4644374 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0618 | K10999 | - | csv:101205724 | 2196.39 |