Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0627 ATGTCGGCCTCGAACATGGCGGGAGATCTAAGCTCTTGGTCACACGCGCTCGTCAGAATCTCCCCCTACACCTTCTCCGCCGTCGGCATTGCCATAGCCATCGGCGTCTCTGTCCTCGGAGCCGCCTGGGGGATCTACATAACCGGAAGCAGTTTGATCGGTGCTGCAATCAAAGCTCCGCGTATTACCTCGAAGAATCTAATTAGTGTAATTTTCTGTGAAGCCGTGGCCATATATGGTGTCATTGTGGCCATCATCCTACAAACAAAACTTGAGAGTGTTCCAGCATCTCAAATCTATGCTCCTGAGTCTCTAAGAGCTGGATATTCAATTTTTGCCTCTGGAATTATTGTGGGCTTTGCCAACCTGGTTTGCGGGTTATGTGTAGGGATAATTGGAAGTAGCTGTGCATTGTCTGATGCTCAAAACTCATCCCTTTTTGTGAAGATTCTTGTGATCGAGATCTTTGGTAGCGCACTCGGGTTATTTGGTGTAATTGTAGGAATAATTATGTCTGCTCAAGCTACATGGCCTGCAAAGGCAGTTTAG 549 47.36 MSASNMAGDLSSWSHALVRISPYTFSAVGIAIAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYAPESLRAGYSIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4704343 4705607 - Lag0037265.1 Lac2g0627 597891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0627 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Lac2g0627 182 FunFam V-type proton ATPase proteolipid subunit 23 178 - -
Lac2g0627 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Lac2g0627 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Lac2g0627 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
Lac2g0627 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac2g0627 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 11 175 - GO:0016021(PANTHER)
Lac2g0627 182 Gene3D - 23 178 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0627 Lac-Chr2:4704343 Lac6g0682 Lac-Chr6:5776674 4.80E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0627 K03661 - rcu:8284846 322.783