Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0633 ATGAGTAGGGAAAACGTTACTTTTCAAGTTGAAGAGTGCTCTGGCAGAATCACGAGGGCACGGGCAAAAGAGCTAAGCGAATCAGGAGGCATTCTGTGCTCCTCAAAATCTTCTGGAGTTCAGAAGCACATTCTACGACCTAACTCAAAAAGAATGGCATCCGACGAGATTAATACTTGTTCAACTTCTTCCAATGGCCTTCCTAATAAAAGAAGAGCAGTGCTAAAGGATGTGACTAACATTTCCAGCAAAGGTTCTGATAAGAGTTGCATTAATACTTCTAATATTCAGGGTGCCAAACCAACTAGAAGAGTTTCTGCAAAAGCTAAGGCAAATGTGCCTTTAAATGTTTCTGTAGAAATTCTAGGAGCAGAAGAAGATGCAAACACAAGATTAGCCGAGGATTTATCTAAAATAAGGGTGGTAGAATCTCGAGAGGCATCTTTACGAGAAACTTTGGACAAAAAAGAGAGAACAATGCAAACTGTGTGTCACACCAGCAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGCATCTTCAGAAGAATCTATCCCGCAGCCAAATGGAAAATATATGGCACCTGAACAATCGGGAGCATCAAATGATAGAGGCATTGTAGACATTGATTCAAACACAAAATGTCTTCAATCATGCAGCATATATGCTCCAGACATATATGACAGGATACGGGTGACGGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAAGCTGGTTCCAGATACATTGTATCTCACTGTGAATGTTATTGATCGGTTTCTCTCCCAAAATTTTATTGAAAAAAAGCGTCTACAACTCCTCGGTGTTGCAAGCATGCTAATTGCATCAAAATACGAGGAGATTTGTGCTCCACGAGTGGAAGATTTCTGCTTCATTACAGATAACACTTACACAAAAGGAGAGGTTGTAGAAATGGAGAGTGAAGTTCTGAACTTACTGCACTTTCGGTTATCTGTTCCCACTACAAAGACGTTTCTAAGGAGATTCATACAATCAGCTCACGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATAGCCGCATCAGCCGTATTTCTTGCGAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACTCTAGAGCACTATACCAGTTACAACGCTTCTGAGCTGAAAACTGCAGTGCTTGCCCTCCACGACTTGCAACTTAACACCAGTGCTTCCTCGCTAAATGCCATTCGTGAGAAGTATAGACAACCGAAGCTGATGTTTCCAAAACAGGAACAACACATCTATAAGTACAAGCCAATTCAAATGCGTAGCGAAATTAACATCCACTCGATCGGTTCTATCACTGTTTTGATTTCTGAAGAACAAGAACGATTCCATTCTTGCCAAAACTACAGGAGGATGTCCATCTTTTCAGTTGATCTGCCTCATTCTCCCTCTAACCTCCCCCAACTGTGA 1605 41.37 MSRENVTFQVEECSGRITRARAKELSESGGILCSSKSSGVQKHILRPNSKRMASDEINTCSTSSNGLPNKRRAVLKDVTNISSKGSDKSCINTSNIQGAKPTRRVSAKAKANVPLNVSVEILGAEEDANTRLAEDLSKIRVVESREASLRETLDKKERTMQTVCHTSRECGVSDMILSASSEESIPQPNGKYMAPEQSGASNDRGIVDIDSNTKCLQSCSIYAPDIYDRIRVTELDQRASTNYMEQLQQDITANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLSQNFIEKKRLQLLGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYNASELKTAVLALHDLQLNTSASSLNAIREKYRQPKLMFPKQEQHIYKYKPIQMRSEINIHSIGSITVLISEEQERFHSCQNYRRMSIFSVDLPHSPSNLPQL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4734814 4740536 + Lag0037271.1 Lac2g0633 597897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0633 534 ProSitePatterns Cyclins signature. 256 287 IPR048258 -
Lac2g0633 534 FunFam Mitotic cyclin 6 239 339 - -
Lac2g0633 534 SMART cyclin_7 358 446 IPR013763 -
Lac2g0633 534 SMART cyclin_7 261 345 IPR013763 -
Lac2g0633 534 PANTHER CYCLINS 203 465 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lac2g0633 534 SUPERFAMILY Cyclin-like 217 351 IPR036915 -
Lac2g0633 534 CDD CYCLIN_AtCycA_like_rpt1 217 350 - -
Lac2g0633 534 SMART Cyclin_C_2 354 472 IPR004367 -
Lac2g0633 534 Gene3D - 225 468 - -
Lac2g0633 534 SUPERFAMILY Cyclin-like 353 469 IPR036915 -
Lac2g0633 534 CDD CYCLIN_AtCycA-like_rpt2 354 467 - -
Lac2g0633 534 FunFam Cyclin A1 341 470 - -
Lac2g0633 534 Gene3D - 239 352 - -
Lac2g0633 534 Pfam Cyclin, C-terminal domain 354 469 IPR004367 -
Lac2g0633 534 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0367 Lac-Chr2:2751758 Lac2g0633 Lac-Chr2:4734814 9.20E-77 dispersed
Lac2g0633 Lac-Chr2:4734814 Lac8g1821 Lac-Chr8:36495788 6.70E-80 dispersed
Lac12g0033 Lac-Chr12:483460 Lac2g0633 Lac-Chr2:4734814 5.90E-40 transposed
Lac1g1551 Lac-Chr1:36801481 Lac2g0633 Lac-Chr2:4734814 2.00E-40 transposed
Lac1g3089 Lac-Chr1:51370896 Lac2g0633 Lac-Chr2:4734814 4.50E-43 transposed
Lac2g0092 Lac-Chr2:703334 Lac2g0633 Lac-Chr2:4734814 7.20E-45 transposed
Lac4g2834 Lac-Chr4:46964845 Lac2g0633 Lac-Chr2:4734814 1.60E-105 transposed
Lac9g2754 Lac-Chr9:45728656 Lac2g0633 Lac-Chr2:4734814 3.20E-45 transposed
Lac2g0633 Lac-Chr2:4734814 Lac6g1238 Lac-Chr6:12008772 5.00E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0633 K06627 - csv:101204275 816.609