Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0648 ATGTCGGCTGTGTCTGAAACAAGGTCGCCGTTGCCTTTGCTCTTCCGGCGGCACTCAAGTGGCGAAATAAGAAATTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTCGTGAACGATGGATACTCGCACCTGAACAAGTTCGTTATAGTTCCATATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTGGTGCTAGTGGTGTACTCAGCGTGGGTATCTCCCTTTGAACTTGCCTTCAAGAAAGTGGCAACTGGCTCTCTTTTACCCGTTGATTTGGTGGTGGATGCATTCTTTGCCCTCGATATCGTGTTGACCTTCTTTGTGGCTTACTTGGATAAAACCACCTATCTCCTTGTTGATGATCATAAGAAGATAGCTGTACGTTACCTTACAAGCCTGGGGTTCCCCATGGACGTAGCCTCCACCCTTCCATTTCAGGTAATATACAGAATTTTCACTGGAAAGATGCACCGGAGTGAGGTTTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGCGTTGGTGAACTCTTCTCAAGGCTGGAGAAAGACATACGCTTTAGTTACTTCTTTACAAGACTCGTCAAACTAATTTGTGTTACACTGTTGGCCGTTCATTCAGCTGGTTGTTTCTACTACTGGCTAGCAGTTCGTCATAAAGATTCAGAAAATACATGGATTGGACTTGAAGTCGAAAATTTCGAAAACAGAAGTATCTGGCTTGGGGGAGAAGATTTTAACATCTTCTACATGCTATTCAACATCGGCCTCACTTCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACAGTGCTATCCGAACAATTACCATGAGGGATTCCATAAATGAGATACTGCGTTATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTAGCGCACATGCAGCTTAAGTTCAAGACAGCAGAGTTGAAGCAAGAAGAGGTGTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCTCAGCACCTTTTCCTTCAAACAGTTGAGAGGGCATACTTATTCAAGGGGCTCTCTGAAGACCTTATCGTCCAATTGGTGTCTGAGATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGATCTCGTACAAGACTGGAACTGAACAGATTTTGGCGAAGCTGGAATCTCCACAGATGGCTGGGGAAATTGCTGTAATGTTGAATATCCCACAGCCATTTACAGTGAGAACTAGAAGACTCTCCCAAGTTGTCAGGATGAGTCATCATCATTTTAAGCAAATTTTACAACCAAACAATGAAGATGGAAAAATCCTTTTCTCCAACTTCACTGAGCGCTTGAAGGGGTTAAAAAGGGAGGAGCAAAACGAAATACCGTACTTCTCAGAATTGCTGGAAGACCTAAATACAGAGCGTACAGAACCAAATGAGGCACAAAATCAAAGAGTACCAAATTATCAAGGAGATCAAAAAATGGAAGGAATACCGGAAGCATCGAAACCAATGCCACCTAAGGTTCCCATCAGGGTGATAATTCACGAGCACCATCCAGATCAAAGTACAAAAGATGGCAACAGTATGGGAAAGTTGATACTTCTACCAGAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAAGAGGGGGAGCTCAATTCTCATGGCTGATGGCTCTAAAGTAGAAGACTTGAATGTTTTAAGAGAGCGTGATCACTTATTCTTTGTTTGA 1818 42.96 MSAVSETRSPLPLLFRRHSSGEIRNLTSVSSSLLPAFGTVVNDGYSHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFALDIVLTFFVAYLDKTTYLLVDDHKKIAVRYLTSLGFPMDVASTLPFQVIYRIFTGKMHRSEVFGFLNLLRFWRLRRVGELFSRLEKDIRFSYFFTRLVKLICVTLLAVHSAGCFYYWLAVRHKDSENTWIGLEVENFENRSIWLGGEDFNIFYMLFNIGLTSYLIGNMTNLIVHSAIRTITMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEEVLEDLPKAIRSSIAQHLFLQTVERAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGSVDVISYKTGTEQILAKLESPQMAGEIAVMLNIPQPFTVRTRRLSQVVRMSHHHFKQILQPNNEDGKILFSNFTERLKGLKREEQNEIPYFSELLEDLNTERTEPNEAQNQRVPNYQGDQKMEGIPEASKPMPPKVPIRVIIHEHHPDQSTKDGNSMGKLILLPESIEELFGLAEKRFGKRGSSILMADGSKVEDLNVLRERDHLFFV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4867663 4874132 - Lag0037286.1 Lac2g0648 597912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0648 605 Gene3D - 62 278 - -
Lac2g0648 605 SUPERFAMILY Voltage-gated potassium channels 55 276 - -
Lac2g0648 605 ProSiteProfiles cAMP/cGMP binding motif profile. 354 473 IPR000595 -
Lac2g0648 605 Gene3D Jelly Rolls 318 484 IPR014710 -
Lac2g0648 605 Pfam Cyclic nucleotide-binding domain 374 457 IPR000595 -
Lac2g0648 605 SUPERFAMILY cAMP-binding domain-like 283 474 IPR018490 -
Lac2g0648 605 CDD CAP_ED 354 466 IPR000595 -
Lac2g0648 605 PANTHER POTASSIUM CHANNEL AKT1 514 604 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Lac2g0648 605 Pfam KHA, dimerisation domain of potassium ion channel 536 604 IPR021789 -
Lac2g0648 605 SMART cnmp_10 354 471 IPR000595 -
Lac2g0648 605 FunFam Potassium channel KAT2 342 478 - -
Lac2g0648 605 Pfam Ion transport protein 60 238 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac2g0648 605 ProSiteProfiles KHA domain profile. 536 605 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0648 Lac-Chr2:4867663 Lac3g0844 Lac-Chr3:6773853 5.10E-07 dispersed
Lac2g0648 Lac-Chr2:4867663 Lac7g0142 Lac-Chr7:1112196 3.00E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0648 K21867 - csv:101215177 1068.14