Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0668 ATGGGCCATGACCCGCTAACAAATGGACTCTCGGAGCCTACCTCTATAAATACCATCCGTTTCGTTTTGCATTCGGCATCTGTGGAAGAAAGTAGAACTGTCGAAGACGAGGAGCCTGAATTTGAAGCTCGAGCTCACATACATGAACCAGTACATGAAGATTCGTTGATTGCTTGTCGTCCCCGAACAATGCCTCGTAAGGTGAGCCACGGGTTAGATTACGACGAAGATTATGACGAGTACGACGATTATGATTATTACGATAACGATTACGACGTAGAAGAAAAAGAAAAAACACCTGAGGCTAAGGAAGAAACAAAGGGGCAAAAGCTTTGGCGATGTCCGATTTGCACTTACGACAATGAAGAAAGTTTTTCTGCATGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGCAAAACTCGTGATGACAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTTTCCATAATGGCCAAGTCTCTCTTTGCATCATCGCCAAATCAGATACCCAAAAGGGCTGTAAAATGTTTGGAGGAAAGAGAAGATAAGGAAACAGAAGATAACATCCACAAGATTGGGAATATCCAGGGCCATTTGCACGAATTCTGTCATGCTCTTAGTACCTGTAGTCATTTCCGCACTAACATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGCAGTCGGCCATAAAGACTTCAACTCTTCAGTCTTATCTTCAGACATCACTAAGGAAGGTGCAAATAATGCAGCATTGACTTCAAAAAGTGCATATAACTCGTCTGCTGTATTGCCAAAGGGCAAATTAGGCAGTATAGGAGATACAAAGCTGAGTACCAAAAGTTCAGACAGCCCAGGCACCTCAATTGGAAAAAGTACAGCGGTCATTGAAGAGCATAATATGTCAATTAGTGTAACAAAAAAATTACAATCACGTGAGAACAGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCATGGATGAGAGCCGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCTTGCTGGTAGTTTGAACAACATGGTTCTAAATGTCGAATCTGCCTATGCAAATTATATTAGTGAACTAGGAAAAACATCAAATGTTCTGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCATTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATATTGTTGTGCTCGATTCCCCTGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTCCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCTGGTATGGACAGTTCAAAGGGGCAAACGAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATCATTGTTGCAGTCAACAAAATGGATGTGGTGGAATATTCCAAAGATCGCTATGACTTTATCAAGCAGCAACTTGGAACATTTTTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGGAAATCAAAATCTGGTGGCTGCCCCTTCTAATGTTCAATTGTCGTCCTGGTATCGTGGACCCAATCTTTTGGAGGCAATTGATTCCCTTCAACCACCAACTAGAGATTTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGCCTGGATCTAAGGTTCTAGTCATGCCATCTGGAGATAAAGGTACTGTTCGCACTTTAGAACGGAATTCTCAGGCTTGCAAAATCGCCAGAGCGGGGGACAATGTGACTGTTAGTCTTCAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAACTCGCAACTCCGATACTAATCGGATCTCAGTTGGAAATTCATGTACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTCGTGAAGAAGGCACCGCGTTGTCTCAGTGCCAAACAAAGTGCAGTGATTGAGGTTGTTTTGCAGAGTCCAGTTTGTGTGGAAGCATTCTCGACTAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCGATGGGCAGAACTATAGCAGTCGGCATTGTGACCCAACTAATCGGAGGTCCCGAATAA 2535 43.39 MGHDPLTNGLSEPTSINTIRFVLHSASVEESRTVEDEEPEFEARAHIHEPVHEDSLIACRPRTMPRKVSHGLDYDEDYDEYDDYDYYDNDYDVEEKEKTPEAKEETKGQKLWRCPICTYDNEESFSACDICGVLRNPLVNNSKTRDDRTVENICKDSGVSIMAKSLFASSPNQIPKRAVKCLEEREDKETEDNIHKIGNIQGHLHEFCHALSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVGHKDFNSSVLSSDITKEGANNAALTSKSAYNSSAVLPKGKLGSIGDTKLSTKSSDSPGTSIGKSTAVIEEHNMSISVTKKLQSRENRSSSTSTSKSAGKFDSMDESRNPSVEREKPQSLAGSLNNMVLNVESAYANYISELGKTSNVLYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHIVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKQQLGTFFRSCGYKDSSLSWIPLSAMGNQNLVAAPSNVQLSSWYRGPNLLEAIDSLQPPTRDFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQPGSKVLVMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVAKHLELKILTLELATPILIGSQLEIHVHHVKEAARVARIVSLLDSKTGKVVKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGGPE 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5028298 5035623 + Lag0037306.1 Lac2g0668 597932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0668 844 FunFam elongation factor 1-alpha isoform X4 734 842 - -
Lac2g0668 844 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 736 840 IPR009001 -
Lac2g0668 844 PANTHER TRANSLATION FACTOR 414 837 IPR050100 GO:0003924(PANTHER)|GO:0006412(PANTHER)
Lac2g0668 844 Pfam GTP-eEF1A C-terminal domain-like 738 837 IPR054696 -
Lac2g0668 844 FunFam Elongation factor 1 alpha-like protein 406 637 - -
Lac2g0668 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 647 IPR027417 -
Lac2g0668 844 Pfam Elongation factor Tu domain 2 663 726 IPR004161 GO:0005525(InterPro)
Lac2g0668 844 Gene3D Translation factors 641 730 - -
Lac2g0668 844 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 413 644 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 ProSiteProfiles Zinc finger RanBP2 type profile. 106 137 IPR001876 -
Lac2g0668 844 SUPERFAMILY Translation proteins 635 730 IPR009000 -
Lac2g0668 844 Gene3D - 407 637 IPR027417 -
Lac2g0668 844 PRINTS GTP-binding elongation factor signature 417 430 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 PRINTS GTP-binding elongation factor signature 557 566 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 PRINTS GTP-binding elongation factor signature 476 484 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 PRINTS GTP-binding elongation factor signature 496 506 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 PRINTS GTP-binding elongation factor signature 512 523 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 FunFam Translation elongation factor EF-1 640 730 - -
Lac2g0668 844 Gene3D Translation factors 734 841 - -
Lac2g0668 844 MobiDBLite consensus disorder prediction 293 367 - -
Lac2g0668 844 SUPERFAMILY Ran binding protein zinc finger-like 108 135 IPR036443 -
Lac2g0668 844 MobiDBLite consensus disorder prediction 295 348 - -
Lac2g0668 844 ProSitePatterns Zinc finger RanBP2-type signature. 112 131 IPR001876 -
Lac2g0668 844 CDD HBS1_C_III 731 839 - -
Lac2g0668 844 Pfam Elongation factor Tu GTP binding domain 416 635 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac2g0668 844 CDD EF1_alpha 417 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0668 Lac-Chr2:5028298 Lac8g2435 Lac-Chr8:42411267 4.50E-78 dispersed
Lac2g0668 Lac-Chr2:5028298 Lac9g2564 Lac-Chr9:44257201 2.00E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0668 K14416 - csv:101219939 1269.99