Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0668 | ATGGGCCATGACCCGCTAACAAATGGACTCTCGGAGCCTACCTCTATAAATACCATCCGTTTCGTTTTGCATTCGGCATCTGTGGAAGAAAGTAGAACTGTCGAAGACGAGGAGCCTGAATTTGAAGCTCGAGCTCACATACATGAACCAGTACATGAAGATTCGTTGATTGCTTGTCGTCCCCGAACAATGCCTCGTAAGGTGAGCCACGGGTTAGATTACGACGAAGATTATGACGAGTACGACGATTATGATTATTACGATAACGATTACGACGTAGAAGAAAAAGAAAAAACACCTGAGGCTAAGGAAGAAACAAAGGGGCAAAAGCTTTGGCGATGTCCGATTTGCACTTACGACAATGAAGAAAGTTTTTCTGCATGTGATATATGTGGGGTTCTGCGCAACCCTTTGGTCAACAACAGCAAAACTCGTGATGACAGAACAGTTGAGAACATCTGCAAAGACTCTGGAGTTTCCATAATGGCCAAGTCTCTCTTTGCATCATCGCCAAATCAGATACCCAAAAGGGCTGTAAAATGTTTGGAGGAAAGAGAAGATAAGGAAACAGAAGATAACATCCACAAGATTGGGAATATCCAGGGCCATTTGCACGAATTCTGTCATGCTCTTAGTACCTGTAGTCATTTCCGCACTAACATAGTCCCTTTCAAGTTTGATATTCCATCCCCAGATGATGTGGTTTCTAATGGATTGCGTTCCTCCAAAGTTGGTTTAAAAGCAGTCGGCCATAAAGACTTCAACTCTTCAGTCTTATCTTCAGACATCACTAAGGAAGGTGCAAATAATGCAGCATTGACTTCAAAAAGTGCATATAACTCGTCTGCTGTATTGCCAAAGGGCAAATTAGGCAGTATAGGAGATACAAAGCTGAGTACCAAAAGTTCAGACAGCCCAGGCACCTCAATTGGAAAAAGTACAGCGGTCATTGAAGAGCATAATATGTCAATTAGTGTAACAAAAAAATTACAATCACGTGAGAACAGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCATGGATGAGAGCCGTAACCCTTCTGTGGAGCGGGAAAAGCCCCAAAGTCTTGCTGGTAGTTTGAACAACATGGTTCTAAATGTCGAATCTGCCTATGCAAATTATATTAGTGAACTAGGAAAAACATCAAATGTTCTGTATAAGCATGATAAATGGATGCTACCTGATAAAGCTGTAGATACTTTGACTCAGCTGAATCTTGCTATAGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGACTTCTGCACCTATTGGGACGTGTATCCCAAAAAGAAATGCACAAATATGAAAAAGAAGCAAAGTCATTGGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGATGAGAGTGCAGAAGAAAGAGAGAGAGGAATAACTATGACTGTTGGTGTTGCTTATTTTGATTCTAAAAGATATCATATTGTTGTGCTCGATTCCCCTGGCCATAAAGATTTTGTTCCAAACATGATATCTGGGGCAACACAAGCTGATGCCGCAGTCCTTGTTATAGATGCATCTGTTGGTGCATTTGAAGCTGGTATGGACAGTTCAAAGGGGCAAACGAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATCATTGTTGCAGTCAACAAAATGGATGTGGTGGAATATTCCAAAGATCGCTATGACTTTATCAAGCAGCAACTTGGAACATTTTTTCGTTCTTGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGGAAATCAAAATCTGGTGGCTGCCCCTTCTAATGTTCAATTGTCGTCCTGGTATCGTGGACCCAATCTTTTGGAGGCAATTGATTCCCTTCAACCACCAACTAGAGATTTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTTTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGCCTGGATCTAAGGTTCTAGTCATGCCATCTGGAGATAAAGGTACTGTTCGCACTTTAGAACGGAATTCTCAGGCTTGCAAAATCGCCAGAGCGGGGGACAATGTGACTGTTAGTCTTCAAGGAGTTGAAGCAAGTAGCGTGATGGCTGGGGGTGTCCTATGCCATCCTGATTTTCCTGTTGCTGTTGCAAAACATTTGGAATTGAAGATTCTCACCTTGGAACTCGCAACTCCGATACTAATCGGATCTCAGTTGGAAATTCATGTACACCACGTGAAGGAGGCTGCTAGAGTTGCAAGGATAGTGTCATTGCTCGATTCGAAGACGGGAAAGGTCGTGAAGAAGGCACCGCGTTGTCTCAGTGCCAAACAAAGTGCAGTGATTGAGGTTGTTTTGCAGAGTCCAGTTTGTGTGGAAGCATTCTCGACTAGTCGAGCTCTCGGGCGAGTATTTCTGAGAGCGATGGGCAGAACTATAGCAGTCGGCATTGTGACCCAACTAATCGGAGGTCCCGAATAA | 2535 | 43.39 | MGHDPLTNGLSEPTSINTIRFVLHSASVEESRTVEDEEPEFEARAHIHEPVHEDSLIACRPRTMPRKVSHGLDYDEDYDEYDDYDYYDNDYDVEEKEKTPEAKEETKGQKLWRCPICTYDNEESFSACDICGVLRNPLVNNSKTRDDRTVENICKDSGVSIMAKSLFASSPNQIPKRAVKCLEEREDKETEDNIHKIGNIQGHLHEFCHALSTCSHFRTNIVPFKFDIPSPDDVVSNGLRSSKVGLKAVGHKDFNSSVLSSDITKEGANNAALTSKSAYNSSAVLPKGKLGSIGDTKLSTKSSDSPGTSIGKSTAVIEEHNMSISVTKKLQSRENRSSSTSTSKSAGKFDSMDESRNPSVEREKPQSLAGSLNNMVLNVESAYANYISELGKTSNVLYKHDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSLGKGSFAYAWALDESAEERERGITMTVGVAYFDSKRYHIVVLDSPGHKDFVPNMISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYDFIKQQLGTFFRSCGYKDSSLSWIPLSAMGNQNLVAAPSNVQLSSWYRGPNLLEAIDSLQPPTRDFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQPGSKVLVMPSGDKGTVRTLERNSQACKIARAGDNVTVSLQGVEASSVMAGGVLCHPDFPVAVAKHLELKILTLELATPILIGSQLEIHVHHVKEAARVARIVSLLDSKTGKVVKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGGPE | 844 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5028298 | 5035623 | + | Lag0037306.1 | Lac2g0668 | 597932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0668 | 844 | FunFam | elongation factor 1-alpha isoform X4 | 734 | 842 | - | - | |
Lac2g0668 | 844 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 736 | 840 | IPR009001 | - | |
Lac2g0668 | 844 | PANTHER | TRANSLATION FACTOR | 414 | 837 | IPR050100 | GO:0003924(PANTHER)|GO:0006412(PANTHER) | |
Lac2g0668 | 844 | Pfam | GTP-eEF1A C-terminal domain-like | 738 | 837 | IPR054696 | - | |
Lac2g0668 | 844 | FunFam | Elongation factor 1 alpha-like protein | 406 | 637 | - | - | |
Lac2g0668 | 844 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 407 | 647 | IPR027417 | - | |
Lac2g0668 | 844 | Pfam | Elongation factor Tu domain 2 | 663 | 726 | IPR004161 | GO:0005525(InterPro) | |
Lac2g0668 | 844 | Gene3D | Translation factors | 641 | 730 | - | - | |
Lac2g0668 | 844 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 413 | 644 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 106 | 137 | IPR001876 | - | |
Lac2g0668 | 844 | SUPERFAMILY | Translation proteins | 635 | 730 | IPR009000 | - | |
Lac2g0668 | 844 | Gene3D | - | 407 | 637 | IPR027417 | - | |
Lac2g0668 | 844 | PRINTS | GTP-binding elongation factor signature | 417 | 430 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | PRINTS | GTP-binding elongation factor signature | 557 | 566 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | PRINTS | GTP-binding elongation factor signature | 476 | 484 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | PRINTS | GTP-binding elongation factor signature | 496 | 506 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | PRINTS | GTP-binding elongation factor signature | 512 | 523 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | FunFam | Translation elongation factor EF-1 | 640 | 730 | - | - | |
Lac2g0668 | 844 | Gene3D | Translation factors | 734 | 841 | - | - | |
Lac2g0668 | 844 | MobiDBLite | consensus disorder prediction | 293 | 367 | - | - | |
Lac2g0668 | 844 | SUPERFAMILY | Ran binding protein zinc finger-like | 108 | 135 | IPR036443 | - | |
Lac2g0668 | 844 | MobiDBLite | consensus disorder prediction | 295 | 348 | - | - | |
Lac2g0668 | 844 | ProSitePatterns | Zinc finger RanBP2-type signature. | 112 | 131 | IPR001876 | - | |
Lac2g0668 | 844 | CDD | HBS1_C_III | 731 | 839 | - | - | |
Lac2g0668 | 844 | Pfam | Elongation factor Tu GTP binding domain | 416 | 635 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Lac2g0668 | 844 | CDD | EF1_alpha | 417 | 636 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0668 | Lac-Chr2:5028298 | Lac8g2435 | Lac-Chr8:42411267 | 4.50E-78 | dispersed | |
Lac2g0668 | Lac-Chr2:5028298 | Lac9g2564 | Lac-Chr9:44257201 | 2.00E-78 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0668 | K14416 | - | csv:101219939 | 1269.99 |