Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0678 ATGGCGAACGCTATCACTCTCCAAGATATTCGAAACGAGTCTGTCGACCTGGAACGTCTTCCAATCGGCGAAGTGTTCCAGAAGTTAAAATGCTCAAAACAAGGTCTCAGTTCAGAGGAAGGAGCCAGTCGGCTCCAAGTTTTCGGACCGAACAAACTCGAAGAGAAAAAGGAAAGCAAAATTCTGAAATTTCTGGGGTTTATGTGGAATCCCCTCTCTTGGGTCATGGAAGCAGCGGCTATAATGGCTATTGTCTTGGCGAACGGAAGTGGAAGGTCTCCGGACTGGCAGGATTTTGTGGGAGTCATTGCCCTGCTTTTGATCAACTCAACCATCAGTTTTTTTGAAGAAAACAACGCAGGAAATGCAGCTGCAGCCCTTATGGCCGGCCTTGCTCCCAAAACTAAGGTTCTCAGAGATGGTCGTTGGAGTGAGCAAGATGCTGCTATTCTGGTTCCTGGAGATATAATAAGTATCAAACTGGGAGACATAATCCCTGCTGATGCTCGTCTTCTTCAGGGGGATCCTTTGAAGATTGATCAGTCTGCTTTAACTGGCGAGTCCCTCCCTGTTACCAAAAACCCTTCAGATGAAGTATTTTCGGGATCAACGTGTAAACAGGGAGAAATTGAAGCAGTAGTGATTGCCACTGGCGTGCACACCTTCTTTGGCAAAGCTGCTCATTTAGTGGACAGCACCAATCAAGTTGGGCATTTCCAAAAAGTTCTTACTGCCATTGGGAATTTCTGTATTTGCTCCATTGCTATTGGAATTATTTTGGAGATCATAGTCATGTACCCAATACAACATCGTGCGTATAGGGATGGCATCGACAATTTGCTGGTGCTTTTGATTGGAGGAATTCCTATTGCCATGCCTACTGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGACTTTCTAAGCAAGGTGCTATTACCAAGCGAATGACTGCCATTGAGGAGATGGCTGGCATGGATGTCCTCTGCAGTGACAAGACTGGAACATTAACCTTGAATAAGCTCACTGTTGACACTTCCTTGACTGAAGTCTTTGTGGGGGGTATGGATAAAGAACATGTCATCCTTCTGGCAGCAAGAGCTTCTAGAACAGAAAATCAGGATGCCATTGATACTGCTATTGTTGGAATGTTAGCAGATCCAAAAGAGGCACGAGCTGGTATTACAGAGGTTCATTTTTTTCCATTCAACCCTGTGGATAAGAGAACTGCTCTGACTTATATTGATTCTGATGATAATTGGCACCGAGTTAGTAAAGGTGCTCCAGAGCAGATCTTAAATATTTGCAATTCCAGCGAAGTCGTCAGGAGACAAGTTCATGGAGTGATTGATAAGTTTGCTGAATGTGGATTGCGATCCCTAGGTGTTGCTAGACAGGAAGTACCTGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGCAACTTGTTGGATTGTTAGCTCTGTTTGATCCTCCCAGGCTTGATAGTGCAGAAACCATCAGCAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATCACTGGTGACCAACTGGCCATTGCCAAGGAAACCGGTCGGAGACTTGACGAGTTGATTGAAACGGCTGATGGATTTGCTGGTGTATTTCCAGAACATAAATATGAAATTGTGAGAAAGTTACAAGAGAAGAAACACATTTGTGGAATGACTGGTGATGGTGTAAATGACGCCCCTGCACTAAAGAGGGCGGATATTGGAATAGCTGTTGCTGATGCAACCGATGCAGCTAGAGGCGCTTCTGACATCGTCCTCACTGAACCCGGATTGAGCGTCATTATCAGTGCAGTATTGACCAGCAGGGCTATCTTCCAGAGGATGAAGAACTATACGATTTATGCAGTTTCCATCACCATTCGTATAGTGTGGATTAGAAATTCAAGTTTTTTGTTATACTGTATACCAGGAACAATCATGACCATTTCGAAGGATCGAGTTAAGCCTTCTCCACAGCCCGACAGTTGGAAGTTGAAGGAAATTTTCGCCACTGGCATTGTGTTAGGAGGTTACTTGGCACTGATGACAGTTCTATTCTTCTGGCTCGCGAGAGACACCGACTTTTTCTCGAACATGTTTCATGTAGAATCCCTAAGGACCAACGACCCAAAAATGATGTCAGCATTGTATCTACAAGTTAGTATCGTGAGTCAGGCCCTTATTTTTGTCACCAGGTCTCGAAGTTGGTCCTTTGCCGAACGTCCTGGACTTCTCTTAGTGGGCGCCTTCATAATCGCCCAGTTGGTTGCAACTCTAATAGCAGTGTATCCAGAATGGCATTTTGCAAGGATAAATGGCATTGGCTGGGGGTGGGCTGGGGTGATCTGGCTATATAGTTTGATAACTTACATCCCTCTTGATATTCTCAAATTTACCATCCGCTACGCTCTCAGTGGAAGAGCTTGGAACAATCTTCTACAGAATAAGGCTGCTTTCACAACAAAGAAAGATTATGGCAAAGAAGAGAGGGAAGCACAATGGGCTACCACACAAAGGACCATTCATGGTCTTCAACGACCTCAATCTAGCAACGCTCTTTCTGATAGGAATAGTTGCGGGGAGCTTTCCGAAATCGCCGAGCAAGCCAGGCGACGAGCTGAAATTGCGAAGTTCCGGGAGCTTGCTGTAAAACAGAACCATGTCGACAAGATAGTTAAAGAGAACGATTCATCAGGTCACAACCATGAAGCGAAAGGGCTGGCTTTGGAGGAGTGA 2748 45.2 MANAITLQDIRNESVDLERLPIGEVFQKLKCSKQGLSSEEGASRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIVLANGSGRSPDWQDFVGVIALLLINSTISFFEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDAAILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGIILEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDTSLTEVFVGGMDKEHVILLAARASRTENQDAIDTAIVGMLADPKEARAGITEVHFFPFNPVDKRTALTYIDSDDNWHRVSKGAPEQILNICNSSEVVRRQVHGVIDKFAECGLRSLGVARQEVPEKTKESPGEPWQLVGLLALFDPPRLDSAETISRALNLGVNVKMITGDQLAIAKETGRRLDELIETADGFAGVFPEHKYEIVRKLQEKKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVWIRNSSFLLYCIPGTIMTISKDRVKPSPQPDSWKLKEIFATGIVLGGYLALMTVLFFWLARDTDFFSNMFHVESLRTNDPKMMSALYLQVSIVSQALIFVTRSRSWSFAERPGLLLVGAFIIAQLVATLIAVYPEWHFARINGIGWGWAGVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKAAFTTKKDYGKEEREAQWATTQRTIHGLQRPQSSNALSDRNSCGELSEIAEQARRRAEIAKFRELAVKQNHVDKIVKENDSSGHNHEAKGLALEE 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5076289 5082688 + Lag0037316.1 Lac2g0678 597942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0678 915 Gene3D - 95 776 - -
Lac2g0678 915 Pfam E1-E2 ATPase 132 310 - -
Lac2g0678 915 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 808 IPR023298 -
Lac2g0678 915 Gene3D - 862 900 - -
Lac2g0678 915 CDD P-type_ATPase_H 35 802 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac2g0678 915 SFLD C1.7: P-type atpase like 312 614 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 563 582 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 586 598 - -
Lac2g0678 915 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Lac2g0678 915 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lac2g0678 915 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Lac2g0678 915 Gene3D - 327 600 IPR023214 -
Lac2g0678 915 SFLD p-type atpase 312 614 IPR044492 -
Lac2g0678 915 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 529 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Lac2g0678 915 NCBIfam HAD-IC family P-type ATPase 397 637 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0678 915 NCBIfam HAD-IC family P-type ATPase 103 346 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0678 915 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Lac2g0678 915 FunFam Plasma membrane ATPase 133 217 - -
Lac2g0678 915 SUPERFAMILY HAD-like 326 610 IPR036412 -
Lac2g0678 915 PANTHER CALCIUM-TRANSPORTING ATPASE 19 836 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lac2g0678 915 Gene3D - 133 217 - -
Lac2g0678 915 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Lac2g0678 915 FunFam Plasma membrane ATPase 342 489 - -
Lac2g0678 915 MobiDBLite consensus disorder prediction 894 915 - -
Lac2g0678 915 Gene3D - 342 489 IPR023299 GO:0000166(InterPro)
Lac2g0678 915 Pfam haloacid dehalogenase-like hydrolase 326 577 - -
Lac2g0678 915 FunFam Plasma membrane ATPase 527 611 - -
Lac2g0678 915 PRINTS H+-transporting ATPase (proton pump) signature 721 742 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0678 915 PRINTS H+-transporting ATPase (proton pump) signature 594 619 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac2g0678 915 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0678 Lac-Chr2:5076289 Lac6g2308 Lac-Chr6:40409927 0.00E+00 dispersed
Lac2g0677 Lac-Chr2:5064718 Lac2g0678 Lac-Chr2:5076289 1.90E-11 tandem
Lac2g0678 Lac-Chr2:5076289 Lac6g1186 Lac-Chr6:11288308 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0678 K01535 - csv:101219224 1494.18