Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0680 ATGCAAATCCAAACTTTTCTTTTTCTCCCCTTCTTTGTTGTTGTTGTTGTTCTTCTTCACTCAACTTGCTGCTTTGCTCAGCTTCATCTCAACTATTACCATAATTCATGTCCCAATGTTGAATCCATTGTAAGAGCTGCAGTTAGACAGAAATTTGATCAAACTTTTGTCACTGCCCCTGCCACTCTCAGGCTCTTTTTTCATGATTGTTTTGTGAGGGGTTGTGATGCTTCTGTGTTGCTTCATTCAAATAACCACACTTCTGAGAAGGACAATGCTGAGAATCTTTCGCTCGCCGGAGACGGGTTCGACACCGTGATCAAAGCTAAGGCCGCCGTCGATAGCGTGCCGGGATGTAAGAACAAGGTGTCTTGTGCTGACATATTGGCTTTGGCTACTAGAGATGTTGTTGTTTTGACCGGAGGACCGTCGTATGCCGTCGAGTTGGGAAGGCAAGACGGGCGGATCTCGACACGAAAGAGCGTTCGACACCATCTTCCTTTGCCTGATTTTGGATTGGATCAGCTCAATGCCATGTTTGCAAGACATGGTCTAACTCAAACAGACATGATTGCTCTCTCAGGTGCACATACAATTGGATTCTCACACTGCAAGCACTTCTCCAAAAGGCTATATAGCTTCCACAGCAAAAACCGAGTCGACCCGACGTTCAATCCGACGTATGTCAACGAGCTCAAGAGGGAGTGCCCAAGAAACGTAGACCAGAGAATCGCTGTCGATATGGACTCGACGTCGTCGTTCACATTCGACAACGTGTACTTCAAGAATCTGCAGATGGGAAAAGGGCTGTTCACCTCAGACCAAGTGTTGTTCACTGATCCAAGATCAAGAAAAACAGTGAACTTATTTGCTTCCAACAGCTCAGCTTTTGAGCAGGCTTTTGTTGTTGCAATGACAAAGCTTGGGAGAGTGGGAGTCAAAACAAGAAACCAAGGGGAGATCAGAATTGACTGTTCTTCAGTGAACTAA 990 45.66 MQIQTFLFLPFFVVVVVLLHSTCCFAQLHLNYYHNSCPNVESIVRAAVRQKFDQTFVTAPATLRLFFHDCFVRGCDASVLLHSNNHTSEKDNAENLSLAGDGFDTVIKAKAAVDSVPGCKNKVSCADILALATRDVVVLTGGPSYAVELGRQDGRISTRKSVRHHLPLPDFGLDQLNAMFARHGLTQTDMIALSGAHTIGFSHCKHFSKRLYSFHSKNRVDPTFNPTYVNELKRECPRNVDQRIAVDMDSTSSFTFDNVYFKNLQMGKGLFTSDQVLFTDPRSRKTVNLFASNSSAFEQAFVVAMTKLGRVGVKTRNQGEIRIDCSSVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5100698 5101969 - Lag0037318.1 Lac2g0680 597944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0680 329 CDD secretory_peroxidase 27 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac2g0680 329 PANTHER - 13 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Lac2g0680 329 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lac2g0680 329 ProSiteProfiles Plant heme peroxidase family profile. 27 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 Pfam Peroxidase 44 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 Gene3D Peroxidase, domain 2 167 308 - -
Lac2g0680 329 FunFam Peroxidase 31 174 - -
Lac2g0680 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 SUPERFAMILY Heme-dependent peroxidases 27 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac2g0680 329 Gene3D - 31 329 - -
Lac2g0680 329 FunFam Peroxidase 167 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0680 Lac-Chr2:5100698 Lac8g2978 Lac-Chr8:46667209 7.80E-103 dispersed
Lac2g0680 Lac-Chr2:5100698 Lac9g1086 Lac-Chr9:25580087 4.00E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0680 K00430 - csv:101218982 603.594