Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0685 ATGGCGGTCGATCTGATGAGTTTTCCTAAGATGGATGATCAGATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATCTGATTCGTCTTCTTTCTCACAAACAACCTTCAAGCCATGTCGATTGCTCTGACCTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTCATCTCTCTTCTCAATCGGACCGGTCATGCGCGTTTCCGGCGAGGTCCGGTTTCTAATTCGACCTCCTCCTCGTCGTCCGGTTCAGTTCCGCAAAATCAGGCGATGAATCTCACTCCTACGACGTTTACTTCACCGGCCGCGGTTTCTGCTCCGCCGTTCACCGCTCCGGCTACGGTCGCTCAGCCGCAGGCGAAGGTTGCTGCGGCGGCGAACTTTCTCCAGTCGCAGCCTCAGAGTATGACTCTCGATTTCACCAGGCCGAATATTTTGAACTCTAACCCGAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCTTCGAGTTCCTCGTTTATGTCCTCTGCGATCACTGGCGACGGCAGTGTATCCAACGGAAAATTAGGAACGTCGATCTTTTTGGCACCGGCGCCGACTGCTTCCGGCGGAAAGCCGCCGCTCTCCGCGGCGCCGTACAAGAAGAGGTGCCACGAACACGATCACTCCGAAGATTTGTCCGGAAAATTCTCCGGCTCTACCTCGGCCTCCGGCAAGTGCCATTGCTCAAAAAGAAGGAAAAATCGCATGAAGAAGACGATCCGAGTCCTGGCGATCAGTTCAAAAATCGCCGATATTCCACCGGATGAGTACTCGTGGAGGAAGTACGGTCAGAAGCCGATCAAGGGATCTCCCTACCCACGGGGATATTACAAGTGTAGTACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGAGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAGTATGGCCGCCGGAGTATCTTTAGTTTTTGAGTCAACTTGA 1041 52.83 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQPSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSNSTSSSSSGSVPQNQAMNLTPTTFTSPAAVSAPPFTAPATVAQPQAKVAAAANFLQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRMKKTIRVLAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPESMAAGVSLVFEST 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5150702 5152298 - Lag0037323.1 Lac2g0685 597949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0685 346 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 329 IPR044810 GO:0003700(InterPro)
Lac2g0685 346 MobiDBLite consensus disorder prediction 72 95 - -
Lac2g0685 346 SUPERFAMILY WRKY DNA-binding domain 266 328 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0685 346 SMART WRKY_cls 268 328 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0685 346 FunFam WRKY transcription factor 65 252 329 - -
Lac2g0685 346 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0685 346 MobiDBLite consensus disorder prediction 74 95 - -
Lac2g0685 346 Gene3D WRKY domain 240 329 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac2g0685 346 Pfam Plant zinc cluster domain 215 266 IPR018872 -
Lac2g0685 346 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0685 Lac-Chr2:5150702 Lac3g0363 Lac-Chr3:2742618 4.70E-74 dispersed
Lac2g0685 Lac-Chr2:5150702 Lac2g0348 Lac-Chr2:2618629 2.30E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23469 PF03106 WRKY 6.60E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0685 - - - 0.0