Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0693 ATGGCGCCGAGATTGGGGTTCTTGAGTTGGTGGGGAAAAGAGAAAGACACTCAAAAGGGAACTCCGGTGGTTGTGACGATGGAGAAACCTAACTTCTCCGTCGTCGAGATCGACGGTCCCGACACCGCATTCCGGCCGGTGGAGAAAAGTAGAGGCAAAAATGCCAAGCAAGTCACGTGGGTTCTTCTTCTTAAGGCCAATCGAGCTGTCGGTTGCATAACTTGGCTTGTTACAGTTCTCTGGGCATTGTTGGGAACGATCAAGAAGAGGCTGATCTACAGGCAAGGAGTCGCCATTGAAGGCGGAAAGTTGGGGAGAGGGAAGTTACTCTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCCATGGCGATTCTTGCTTTTGAAATACTTGCCTACTTCAAAGGCTGGCATTATTTTCAGAATCCCAATCTGCACATTCCTCAGGCTTCTGATTTGCAAGGGTTGCTTCATTCACTCTATGTTGCTTGGTTAACTTTTAGAGCAGAGTACATTGCTCCCCTCATTCAAACACTCTCTAAATTTTGCATTGTTCTGTTCCTTATCCAATCAGTGGATCGTATGATCCTTTGTTTTGGTTGCCTGTGGATAAAATACAAAAGAATTGAACCAAAGATTGAAGGGGATCCCTTCAGGTTGGATGATGTGGAGGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTACGAGCAATCTATCTCGGCAGTCTGTCAGATCGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGCTAATTAAGGCAGAGGTTGCTAAATGGAGCCAAAAGGGGGTAAACATAATCTATCGCCATCGATTAGTAAGAACAGGATATAAAGCTGGGAATCTCAAGTCTGCAATGAGTTGTGATTATGTTAGAGACTATGAGTTTGTAGCAATTTTTGACGCTGACTTTCAACCAAATCCAGATTTTCTTAAACTGACAGTCCCCCATTTCAAGGATAACCCGGAGCTAGGTTTGGTTCAGGCCAGATGGTCTTTCGTGAACAAGGACGAAAACTTGTTGACACGTCTTCAAAACATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTCGGTTTCAATGGCACTGCTGGTGTTTGGAGAATTAAAGCCCTTGAGGAGTCGGGAGGGTGGCTTGAAAGAACAACTGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTGTTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAACAACATCGTTGGCATTCTGGTCCTATGCAACTATTCAGGTTGTGTCTTCCAGCAATCATAAGTTCTAAGATATCAGCATGGAAAAAGGCAAATTTGATACTGCTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTTTATTCCTTCACGTTGTTCTGTATAATTCTTCCTCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTAATCTGCTATGTGCCCGTCTTCATGTCATTACTCAACATTCTTCCATCCCCCAAATCTTTTCCTTTTATCGTCCCTTACCTTCTTTTTGAAAACACTATGTCCGTCACCAAATTCAATGCCATGGTATCTGGCTTATTCCAGTTGGGAAGCTCTTATGAATGGATTGTGACTAAAAAGGCTGGCAGGTCCTCCGAATCCGACTTACTTGCTGCTGCTGAAAGAGACTCTAAGATAATGAATCAAGCTCAGATCTATAGAGGTGCTTCTGAGAGTGAGCTCTCTGAGTTGAGCCACTTAAAGGAACGCAAAGAAATCGTCACTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTGGCGCTCGCATTTCTTTTACTTTTGGCTTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCATTTCTACTTCTTGATGTTCCAAGGTGTGACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTAA 2088 43.49 MAPRLGFLSWWGKEKDTQKGTPVVVTMEKPNFSVVEIDGPDTAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLVTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSMAILAFEILAYFKGWHYFQNPNLHIPQASDLQGLLHSLYVAWLTFRAEYIAPLIQTLSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFRLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIIYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIISSKISAWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKIMNQAQIYRGASESELSELSHLKERKEIVTAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5210373 5213189 - Lag0037331.1 Lac2g0693 597957

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0693 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 449 IPR029044 -
Lac2g0693 695 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 156 694 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lac2g0693 695 FunFam probable xyloglucan glycosyltransferase 5 223 448 - -
Lac2g0693 695 Pfam Glycosyl transferase family group 2 324 534 IPR001173 -
Lac2g0693 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 530 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0693 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2237 Lac-Chr1:43769660 Lac2g0693 Lac-Chr2:5210373 5.40E-114 dispersed
Lac2g0693 Lac-Chr2:5210373 Lac8g2613 Lac-Chr8:43718309 4.40E-273 dispersed
Lac2g0693 Lac-Chr2:5210373 Lac2g0428 Lac-Chr2:3122723 9.20E-263 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g1614 . 206 366 REM Transcription Factor Family AT1G49480 72.0 1.3e-56 217.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac9g1614 . 206 366 REM Transcription Factor Family AT1G49480 72.0 1.3e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38