Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0725 ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCGGATTAGATCTGCGTCAAACTACGGTAAAGGAAGAAGCCATGAGGGGTTAATCAAGTATGGATTCTGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTACAGATTCAAGAACATGAGTTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAATATCCTGAAAGAGGAAGAGTTTTGGGTTGACCCGAACAGCTCCATCTCAAAAGCCTATGAGAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGACGACTATGGGTGGCCAATGTTGGAGATTCACGTGCAGTTCTTTCAAGAGGGGGTGAAGCTGTACAGATGAGCATCGATCACGAGCCGAATACAGAACGTGGCATCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAACGGCCAGTTAGCAGTTTCGCGAGCATTTGGAGACAAGAGTCTCAAATCTCATCTGCGATCGGATCCTGACATACGTGATATCAATATAGACGCCGACATGGACATATTAATTCTTGCCAGCGACGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCGGTCGATATTGCTCGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACAGAGGCTTTGCAGAAAGAGAGTAAAGATGACATTTCATGCATTGTGGTTAGATTTAGTTCTTACGAACTTTGCTTGTTCGGACTGCAAACAGAAGTTTTCTTGCTGTATTTAGGTTTTCCTGTAGTTTTCCAGTGTTTTCGAACTGCATTCAGTGAGCCTCTACGTTCTGATTTATTTCCTCCTCCGTTTCATTGCGGTTCGTCTTCTTTGCGCGCTTTCTGTGTCTTCTTCTTCGCAAAATCGTCGGAAAAGAACGAAGCCTATTCCGGTACAAACTGTGGGTTCAAAAGCAAGCTTCAAATCACCTCATCTTCTTTGGGGACTCGATTACGACTCGGCCAGAGCGGTCTGACTCGTTCCAAGCTAAGTGCATCAATTCATGCGTGTGATGGCTGCCAACTCGGTGCGAAAACTGAGCCTGATCGGATTGAGCTATGGCGGGTTCGTCGGATATTGCTTGGCGGCAAGATATGGGGATGTGGTGATATGCAGTGTAGTGGAGGAGTTTGTATGGAAGAGAAGGACCTGAAGGAAGGGTTGTTTAAAGTCTCTGACTTGGAGGAGGCTGCCAAGATTTTGGTGCCCCAAGATCCTAAGAAATTGAAGGAGTTGGTGAACTTTGGCCTCTTCGAGCCTCCTCCCTTATGA 1428 45.24 MDKLCCFNASYSRIRSASNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMSIDHEPNTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDADMDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALQKESKDDISCIVVRFSSYELCLFGLQTEVFLLYLGFPVVFQCFRTAFSEPLRSDLFPPPFHCGSSSLRAFCVFFFAKSSEKNEAYSGTNCGFKSKLQITSSSLGTRLRLGQSGLTRSKLSASIHACDGCQLGAKTEPDRIELWRVRRILLGGKIWGCGDMQCSGGVCMEEKDLKEGLFKVSDLEEAAKILVPQDPKKLKELVNFGLFEPPPL 475
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 5585682 5593948 + Lag0037363.1 Lac2g0725 597989
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0725 475 SUPERFAMILY PP2C-like 27 279 IPR036457 -
Lac2g0725 475 SMART PP2C_SIG_2 42 278 IPR001932 -
Lac2g0725 475 FunFam Probable protein phosphatase 2C 39 22 279 - -
Lac2g0725 475 CDD PP2Cc 30 278 IPR001932 -
Lac2g0725 475 SMART PP2C_4 23 276 IPR001932 -
Lac2g0725 475 Pfam Protein phosphatase 2C 40 271 IPR001932 -
Lac2g0725 475 Gene3D - 26 283 IPR036457 -
Lac2g0725 475 ProSiteProfiles PPM-type phosphatase domain profile. 31 278 IPR001932 -
Lac2g0725 475 PANTHER PROTEIN PHOSPHATASE 27 277 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0725 Lac-Chr2:5585682 Lac5g3019 Lac-Chr5:48090074 3.70E-53 dispersed
Lac11g1003 Lac-Chr11:11300133 Lac2g0725 Lac-Chr2:5585682 5.20E-31 transposed
Lac11g2666 Lac-Chr11:42623504 Lac2g0725 Lac-Chr2:5585682 1.50E-09 transposed
Lac1g3597 Lac-Chr1:55182928 Lac2g0725 Lac-Chr2:5585682 2.90E-74 transposed
Lac2g0519 Lac-Chr2:3855998 Lac2g0725 Lac-Chr2:5585682 1.60E-54 transposed
Lac2g1250 Lac-Chr2:10223345 Lac2g0725 Lac-Chr2:5585682 9.50E-86 transposed
Lac4g2563 Lac-Chr4:44802793 Lac2g0725 Lac-Chr2:5585682 8.30E-35 transposed
Lac5g0780 Lac-Chr5:10381177 Lac2g0725 Lac-Chr2:5585682 5.90E-06 transposed
Lac5g2701 Lac-Chr5:45472452 Lac2g0725 Lac-Chr2:5585682 2.20E-107 transposed
Lac6g0688 Lac-Chr6:5849288 Lac2g0725 Lac-Chr2:5585682 6.50E-30 transposed
Lac7g2848 Lac-Chr7:47619653 Lac2g0725 Lac-Chr2:5585682 1.30E-35 transposed
Lac8g1754 Lac-Chr8:35770777 Lac2g0725 Lac-Chr2:5585682 3.10E-46 transposed
Lac8g3063 Lac-Chr8:47318245 Lac2g0725 Lac-Chr2:5585682 3.80E-30 transposed
Lac1g2816 Lac-Chr1:49231143 Lac2g0725 Lac-Chr2:5585682 1.70E-09 wgd
Lac2g0725 Lac-Chr2:5585682 Lac6g0891 Lac-Chr6:7864705 1.60E-11 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0725 K17506 - csv:101213414 533.102