Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g0725 | ATGGATAAGCTCTGCTGTTTTAATGCTTCATACTCTCGGATTAGATCTGCGTCAAACTACGGTAAAGGAAGAAGCCATGAGGGGTTAATCAAGTATGGATTCTGCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTACAGATTCAAGAACATGAGTTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTGCCTGCCTACTTACAAAAGCATTTGTTTTCTAATATCCTGAAAGAGGAAGAGTTTTGGGTTGACCCGAACAGCTCCATCTCAAAAGCCTATGAGAAGACGGACCAGGCAATTCTATCCCACAGCTCTGACTTGGGTCGTGGCGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGACGACTATGGGTGGCCAATGTTGGAGATTCACGTGCAGTTCTTTCAAGAGGGGGTGAAGCTGTACAGATGAGCATCGATCACGAGCCGAATACAGAACGTGGCATCATTGAGAATAAAGGTGGCTTTGTTTCAAACATGCCAGGAGATGTACCTCGAGTGAACGGCCAGTTAGCAGTTTCGCGAGCATTTGGAGACAAGAGTCTCAAATCTCATCTGCGATCGGATCCTGACATACGTGATATCAATATAGACGCCGACATGGACATATTAATTCTTGCCAGCGACGGTCTTTGGAAGGTAATGGCCAATCAAGAAGCGGTCGATATTGCTCGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACAGAGGCTTTGCAGAAAGAGAGTAAAGATGACATTTCATGCATTGTGGTTAGATTTAGTTCTTACGAACTTTGCTTGTTCGGACTGCAAACAGAAGTTTTCTTGCTGTATTTAGGTTTTCCTGTAGTTTTCCAGTGTTTTCGAACTGCATTCAGTGAGCCTCTACGTTCTGATTTATTTCCTCCTCCGTTTCATTGCGGTTCGTCTTCTTTGCGCGCTTTCTGTGTCTTCTTCTTCGCAAAATCGTCGGAAAAGAACGAAGCCTATTCCGGTACAAACTGTGGGTTCAAAAGCAAGCTTCAAATCACCTCATCTTCTTTGGGGACTCGATTACGACTCGGCCAGAGCGGTCTGACTCGTTCCAAGCTAAGTGCATCAATTCATGCGTGTGATGGCTGCCAACTCGGTGCGAAAACTGAGCCTGATCGGATTGAGCTATGGCGGGTTCGTCGGATATTGCTTGGCGGCAAGATATGGGGATGTGGTGATATGCAGTGTAGTGGAGGAGTTTGTATGGAAGAGAAGGACCTGAAGGAAGGGTTGTTTAAAGTCTCTGACTTGGAGGAGGCTGCCAAGATTTTGGTGCCCCAAGATCCTAAGAAATTGAAGGAGTTGGTGAACTTTGGCCTCTTCGAGCCTCCTCCCTTATGA | 1428 | 45.24 | MDKLCCFNASYSRIRSASNYGKGRSHEGLIKYGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMSIDHEPNTERGIIENKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDIRDINIDADMDILILASDGLWKVMANQEAVDIARRIKDPLKAAKQLITEALQKESKDDISCIVVRFSSYELCLFGLQTEVFLLYLGFPVVFQCFRTAFSEPLRSDLFPPPFHCGSSSLRAFCVFFFAKSSEKNEAYSGTNCGFKSKLQITSSSLGTRLRLGQSGLTRSKLSASIHACDGCQLGAKTEPDRIELWRVRRILLGGKIWGCGDMQCSGGVCMEEKDLKEGLFKVSDLEEAAKILVPQDPKKLKELVNFGLFEPPPL | 475 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 5585682 | 5593948 | + | Lag0037363.1 | Lac2g0725 | 597989 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g0725 | 475 | SUPERFAMILY | PP2C-like | 27 | 279 | IPR036457 | - | |
| Lac2g0725 | 475 | SMART | PP2C_SIG_2 | 42 | 278 | IPR001932 | - | |
| Lac2g0725 | 475 | FunFam | Probable protein phosphatase 2C 39 | 22 | 279 | - | - | |
| Lac2g0725 | 475 | CDD | PP2Cc | 30 | 278 | IPR001932 | - | |
| Lac2g0725 | 475 | SMART | PP2C_4 | 23 | 276 | IPR001932 | - | |
| Lac2g0725 | 475 | Pfam | Protein phosphatase 2C | 40 | 271 | IPR001932 | - | |
| Lac2g0725 | 475 | Gene3D | - | 26 | 283 | IPR036457 | - | |
| Lac2g0725 | 475 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 278 | IPR001932 | - | |
| Lac2g0725 | 475 | PANTHER | PROTEIN PHOSPHATASE | 27 | 277 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0725 | Lac-Chr2:5585682 | Lac5g3019 | Lac-Chr5:48090074 | 3.70E-53 | dispersed | |
| Lac11g1003 | Lac-Chr11:11300133 | Lac2g0725 | Lac-Chr2:5585682 | 5.20E-31 | transposed | |
| Lac11g2666 | Lac-Chr11:42623504 | Lac2g0725 | Lac-Chr2:5585682 | 1.50E-09 | transposed | |
| Lac1g3597 | Lac-Chr1:55182928 | Lac2g0725 | Lac-Chr2:5585682 | 2.90E-74 | transposed | |
| Lac2g0519 | Lac-Chr2:3855998 | Lac2g0725 | Lac-Chr2:5585682 | 1.60E-54 | transposed | |
| Lac2g1250 | Lac-Chr2:10223345 | Lac2g0725 | Lac-Chr2:5585682 | 9.50E-86 | transposed | |
| Lac4g2563 | Lac-Chr4:44802793 | Lac2g0725 | Lac-Chr2:5585682 | 8.30E-35 | transposed | |
| Lac5g0780 | Lac-Chr5:10381177 | Lac2g0725 | Lac-Chr2:5585682 | 5.90E-06 | transposed | |
| Lac5g2701 | Lac-Chr5:45472452 | Lac2g0725 | Lac-Chr2:5585682 | 2.20E-107 | transposed | |
| Lac6g0688 | Lac-Chr6:5849288 | Lac2g0725 | Lac-Chr2:5585682 | 6.50E-30 | transposed | |
| Lac7g2848 | Lac-Chr7:47619653 | Lac2g0725 | Lac-Chr2:5585682 | 1.30E-35 | transposed | |
| Lac8g1754 | Lac-Chr8:35770777 | Lac2g0725 | Lac-Chr2:5585682 | 3.10E-46 | transposed | |
| Lac8g3063 | Lac-Chr8:47318245 | Lac2g0725 | Lac-Chr2:5585682 | 3.80E-30 | transposed | |
| Lac1g2816 | Lac-Chr1:49231143 | Lac2g0725 | Lac-Chr2:5585682 | 1.70E-09 | wgd | |
| Lac2g0725 | Lac-Chr2:5585682 | Lac6g0891 | Lac-Chr6:7864705 | 1.60E-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g0725 | K17506 | - | csv:101213414 | 533.102 |