Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0774 ATGATTTCTCCTTGCCAGTCCCCAGATCGATGGTGTGTGATTTGCTCCAAAAGTTTTCGGTTTCTGCGTCCTAACGACGACAGATCGAAAGCTCAAGAAACCACCGCACCACCGATCAGCGCAACATTTCGACGACGGGCAGAGGGAGCAATGCGTTTCGGTACGATCCCTTTTCCCCTTGTTTGTTTTCGGGAAGTTGAGGATTCATGGCTAATTTTGCTTCTTCTCTCCTTTGCATGGATCAAATTTGCTCCGATCAGATCGCTGGCTGTTGGTTATCACACAACAATCAAGGTTTCTGTATGGTACTCAGAGCTCACGGTTCAGCTTAAAGCGCCTGTAATTCATGAAGGGAAGGTTCCATTCCATCCAGATTTCACCATTCCAAAACAGACTCAACGTTTTTCTTCATTGTTCATCACCAAAATCTATGGTCTATCTGGACCCTATATATATGGACTTGGCTCTCTTCTCTTTTCACAATTGAGTTGTTGTTGTTCAAAGCCAATGGCTTGCAAGTTCCTGTTTCCTCCGTTAGTAGCTTCGTTTCTAATACTTTTAACCCTTCTTAGCTCATCATCTGCAGCAGATGATTCTCTCACTAATTTTTCCCCTGCAAAAGCCATTTGCAAATTCACCTCAAATCCTTCTTACTGCATCTCTGTGCTTCAAAAATCCACAGGCAATGTCTACGAGTCAGGTCGGTTTTCGATGCGTCGGTCTTTGTCCAAAGCATCTAGATTCTTTGACTTGATCGAGAAGCATCTTCAAAACAGTTCAACTCTACCAAAATCCGTCACTGGAGCTCTTACAGATTGCCAGTATCTTGCCCAACTAAACATCAATTTCTTGTCTAATTCATTTCGGGCCGTCAATGGCACTGATAAAAAGCTAACTTACTCAAAAGCTGATTATATCCAGAGTCTTCTGAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGCCTAAAAACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTCTTAGCCCCACTCATTGACTGTACCAAATCCTACAGTCTTTCTCTGGATCTTTTTACAAAGGGCTGGGTGCCTAGGAATAGAAACAGAACACTTGAGCACCCTGGGAGAAAACACCTCCAGTTTAGGAAGGGACCGTTACCGTTGAGAATGTCGAGACACGACCGTGCGGTTTATAACTCGGTGGCGAATCGGAGAAGGCTTACATCTTCATCAGATGATGGAGTCTTGATTAATGGCATTGTAGTTGTGAGTCAAGATGGCACAGGGGACTTCCTCACCATCACTGACGCTGTTAATGCATCTCCAAACAACTCTCTTGCTGCCAATGGCTACTTCTTGATTTACATCACGGCTGGTGTTTACCAAGAGTATGTGTCGATCCCTTCCAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAGACTATCATTACGGGCAACCGAAGCGTCGTGGACGGGTGGACGACTTTCAATAGTGCAACTTTTGCTGTGGCAGCAGAAGGATTCATGGCAGTGAACATAACCTTTCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCAGTAAGAAGCGGCGCCGATATGGCTGTCTTCTACAGCTGCAGCTTTGAAGGCTACCAAGACACCTTATACACACACTCCCTCAGACAATTCTTCAGAGAATGTGACATCTATGGCACAGTGGACTTCATATTTGGAAATGCAGCAGTGGTGTTCCAAAACTGCAACATATATCCCCGTCTACCGCGTCCAGGACAGAGCAACATGATCACGGCTCAAGGTCGATCGGACCCGAACCAAAACACCGGGACTTCGATCCACAACTGCACGATCCGAGCCACGAGCGACTTGGCTGCGAGCAACAGCTACATCAACAAGACATATTTGGGAAGACCATGGAAGCAATATTCAAGAACAGTGTATATGCAGACATTCATTGATGGGTTTATAAATCCTGGTGGTTGGGATCCTTGGTCAAGTGAATATCTAAGCACTTTATATTATGCTGAGTATAACAATACAGGAGCTGGATCAAATACAAAGAACAGAGTTACCTGGCCTGGTTACCATGTGATTTATAATGCTACAGATGCTTCTAATTTTACAGTTTCAAACTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACTGATGTGCCTTACACTGGAGGCTTTGTATAA 2199 44.47 MISPCQSPDRWCVICSKSFRFLRPNDDRSKAQETTAPPISATFRRRAEGAMRFGTIPFPLVCFREVEDSWLILLLLSFAWIKFAPIRSLAVGYHTTIKVSVWYSELTVQLKAPVIHEGKVPFHPDFTIPKQTQRFSSLFITKIYGLSGPYIYGLGSLLFSQLSCCCSKPMACKFLFPPLVASFLILLTLLSSSSAADDSLTNFSPAKAICKFTSNPSYCISVLQKSTGNVYESGRFSMRRSLSKASRFFDLIEKHLQNSSTLPKSVTGALTDCQYLAQLNINFLSNSFRAVNGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLKTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRNRNRTLEHPGRKHLQFRKGPLPLRMSRHDRAVYNSVANRRRLTSSSDDGVLINGIVVVSQDGTGDFLTITDAVNASPNNSLAANGYFLIYITAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVVDGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVAVRSGADMAVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQSNMITAQGRSDPNQNTGTSIHNCTIRATSDLAASNSYINKTYLGRPWKQYSRTVYMQTFIDGFINPGGWDPWSSEYLSTLYYAEYNNTGAGSNTKNRVTWPGYHVIYNATDASNFTVSNFLVGDVWLPPTDVPYTGGFV 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5992757 5997728 - Lag0037412.1 Lac2g0774 598038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0774 732 ProSitePatterns Pectinesterase signature 2. 564 573 IPR033131 -
Lac2g0774 732 PANTHER PECTINESTERASE 184 722 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac2g0774 732 Pfam Plant invertase/pectin methylesterase inhibitor 207 353 IPR006501 GO:0004857(InterPro)
Lac2g0774 732 Gene3D Invertase/pectin methylesterase inhibitor family protein 205 357 IPR035513 -
Lac2g0774 732 SMART PMEI_2 201 354 IPR006501 GO:0004857(InterPro)
Lac2g0774 732 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 207 357 IPR035513 -
Lac2g0774 732 Gene3D - 414 731 IPR012334 -
Lac2g0774 732 NCBIfam pectinesterase inhibitor domain 182 328 IPR006501 GO:0004857(InterPro)
Lac2g0774 732 FunFam Pectinesterase 413 731 - -
Lac2g0774 732 CDD PMEI-like_3 208 359 - -
Lac2g0774 732 Pfam Pectinesterase 418 717 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac2g0774 732 SUPERFAMILY Pectin lyase-like 414 729 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0774 Lac-Chr2:5992757 Lac4g2485 Lac-Chr4:44186106 1.90E-186 dispersed
Lac2g0774 Lac-Chr2:5992757 Lac9g0505 Lac-Chr9:9587043 4.50E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0774 K01051 - csv:101205879 1012.68