Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0788 ATGCCGCACAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACTTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGCGGCCTGCGCGCGACTTTAGTGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACTCGATCGGCAACTGCTCACGTGAAAACTTGGCTATCCAATTGTGACGAGGACCGGGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGACCATGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCCAGAGTATCAAGCGGGAGTAGCTATGCGGGAAGTCTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGATGTTAAGGATTCTTCGGCGTCAAAGATCTTTTCCTCGCACACGGCGATGCCGGAAGAGATTGAGGTTGGAGACGGTAAGGAAAACCTGGCACAGAGAGTGACAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCAACGCTTCGTTCCCATGCCAGTCTCGCTGGCGATCCTGTGCTTATGGAGGAAGGCAGGGAGGAAGTTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTATCTTACTCCGACAAAATATCAGATGGGTTCTACAATATTTTGGGTATGAACCCGTATCTTTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCACCTCTGATGTCGCTTAAAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAACTTGAAGACAAAGCACAAGAACTATATTGTGCTTCAGAGAACACCTTAGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCGATCTACATGGGTGGCACTTTCCCGGTGGAGCAAGGGGGGTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAATTGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTGTGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCGGATCATCGGTCCTCTTGCCTTGTCAAAATTGAAGATGATAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATATACACGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCACTCCATGTTTCTCATTTAAAAGAGTTCCAAGAACCTTATGTGGAAAGTTGTATAAGCCGTCAAATTGTTGGGCCAAAGCAAACCTGTGGTTTTCCTGAACCTCTACATTCAGGTTTTGGAGAGCACCAGATGAAAGGGGGAAGCACTTTACTTAAAAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCATCTCAGCTGTGTTTGGAAACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACCGACACTGATGCCTCTGAGGTCTTGGGTTCTGTTGCCAGTGCAACTTTACATGAAAACAAAGTTGTCATTGAAGAAATATACCGAGAGTCAGTTGTGGCCGGGATTTCCCTGAATGAAACTAGCATTAATCCGTCCAAATTGAGCTTGTCAACCCAAACTGATTCAAAAGAGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACGTATCCTAAATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTAAAGGTTCTAACGGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCGATAATGAAGCGGGTCCGCCATCCGAATGTGGTACTTTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCGAGAGGTAGTCTATACCGCCTAATTCACAGACCATCTTCAGGTGAATTGATGGATCAAAGGAAAAGATTACGCATGGCGTTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTAGCAGGAACACCCGAGTGGATGGCTCCCGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGTCTTGGCCCAGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGTACTTCCCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGACGATCCGGTTCAGCGTCCATCCTTTGCAAGCATAGTGGACTCCCTAAAGAAATTGCTAAAATCTCCACAGCAGTTGATAGCAATGGGTGGAACTTCCAAATTTACTGGGAACGTATTTTTACTGCTAACTGCACTGTTCCACTACCAGGCCTGTAATCTTTATGAACCCGCAATGCTTTCTCTGAACAGCGTTGATGACTTTATTGGACTTGGAATTCAGTGCAAAGCAGTGTTTATTACAGCCATTCAAATGACAGGGGCCATGGCTTTGTCACAGCATATGCCGATCCATGGTCTCATTATGAGTTGCACTTCCAACACCCGTAATGGAATCATCGACTACACTGATTGGTAG 3030 45.87 MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPDHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKIFSSHTAMPEEIEVGDGKENLAQRVTESYYLQLALAATLRSHASLAGDPVLMEEGREEVTDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLKTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHVSHLKEFQEPYVESCISRQIVGPKQTCGFPEPLHSGFGEHQMKGGSTLLKSSGAETDKLVDQACMGMRSSQLCLETKVSKECVLQSHIMPSTDTDASEVLGSVASATLHENKVVIEEIYRESVVAGISLNETSINPSKLSLSTQTDSKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPVQRPSFASIVDSLKKLLKSPQQLIAMGGTSKFTGNVFLLLTALFHYQACNLYEPAMLSLNSVDDFIGLGIQCKAVFITAIQMTGAMALSQHMPIHGLIMSCTSNTRNGIIDYTDW 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6100163 6109325 - Lag0037426.1 Lac2g0788 598052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0788 1009 PANTHER SERINE-THREONINE PROTEIN KINASE 330 911 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac2g0788 1009 MobiDBLite consensus disorder prediction 109 133 - -
Lac2g0788 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 SMART serkin_6 653 911 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 FunFam Serine/threonine-protein kinase CTR1 732 917 - -
Lac2g0788 1009 ProSitePatterns Protein kinases ATP-binding region signature. 659 680 IPR017441 GO:0005524(InterPro)
Lac2g0788 1009 ProSiteProfiles Protein kinase domain profile. 653 911 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Lac2g0788 1009 MobiDBLite consensus disorder prediction 20 57 - -
Lac2g0788 1009 SUPERFAMILY Protein kinase-like (PK-like) 627 906 IPR011009 -
Lac2g0788 1009 CDD STKc_MAP3K-like 659 907 - -
Lac2g0788 1009 FunFam Serine/threonine-protein kinase isoform 1 643 731 - -
Lac2g0788 1009 Gene3D Transferase(Phosphotransferase) domain 1 732 919 - -
Lac2g0788 1009 Gene3D Phosphorylase Kinase; domain 1 646 730 - -
Lac2g0788 1009 MobiDBLite consensus disorder prediction 25 40 - -
Lac2g0788 1009 PRINTS Tyrosine kinase catalytic domain signature 768 786 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 PRINTS Tyrosine kinase catalytic domain signature 727 740 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 PRINTS Tyrosine kinase catalytic domain signature 834 856 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 PRINTS Tyrosine kinase catalytic domain signature 878 900 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0788 1009 Pfam Protein tyrosine and serine/threonine kinase 653 907 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2241 Lac-Chr1:43812254 Lac2g0788 Lac-Chr2:6100163 4.90E-173 dispersed
Lac2g0452 Lac-Chr2:3325129 Lac2g0788 Lac-Chr2:6100163 1.10E-117 dispersed
Lac2g0788 Lac-Chr2:6100163 Lac3g2146 Lac-Chr3:26804401 2.30E-121 dispersed
Lac2g0788 Lac-Chr2:6100163 Lac10g2917 Lac-Chr10:43761839 1.30E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85993 PF07714 PK_Tyr_Ser-Thr 4.00E-64 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0788 - - - 0.0