Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0788 | ATGCCGCACAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACTTCCAAACAGATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGCGGCCTGCGCGCGACTTTAGTGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACTCGATCGGCAACTGCTCACGTGAAAACTTGGCTATCCAATTGTGACGAGGACCGGGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGACCATGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCCAGAGTATCAAGCGGGAGTAGCTATGCGGGAAGTCTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGATGTTAAGGATTCTTCGGCGTCAAAGATCTTTTCCTCGCACACGGCGATGCCGGAAGAGATTGAGGTTGGAGACGGTAAGGAAAACCTGGCACAGAGAGTGACAGAGAGTTATTACCTGCAACTTGCTTTGGCTGCAACGCTTCGTTCCCATGCCAGTCTCGCTGGCGATCCTGTGCTTATGGAGGAAGGCAGGGAGGAAGTTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTATCTTACTCCGACAAAATATCAGATGGGTTCTACAATATTTTGGGTATGAACCCGTATCTTTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCACCTCTGATGTCGCTTAAAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAACTTGAAGACAAAGCACAAGAACTATATTGTGCTTCAGAGAACACCTTAGTGTTGGTGGAGAAACTAGGAAAACTTGTTGCGATCTACATGGGTGGCACTTTCCCGGTGGAGCAAGGGGGGTTGCACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAATTGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTGTGCAGGCATCGTGCAATACTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCGGATCATCGGTCCTCTTGCCTTGTCAAAATTGAAGATGATAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCAGGAAATATACACGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCTTCAATGCCTTCACCACTCCATGTTTCTCATTTAAAAGAGTTCCAAGAACCTTATGTGGAAAGTTGTATAAGCCGTCAAATTGTTGGGCCAAAGCAAACCTGTGGTTTTCCTGAACCTCTACATTCAGGTTTTGGAGAGCACCAGATGAAAGGGGGAAGCACTTTACTTAAAAGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCATCTCAGCTGTGTTTGGAAACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACCGACACTGATGCCTCTGAGGTCTTGGGTTCTGTTGCCAGTGCAACTTTACATGAAAACAAAGTTGTCATTGAAGAAATATACCGAGAGTCAGTTGTGGCCGGGATTTCCCTGAATGAAACTAGCATTAATCCGTCCAAATTGAGCTTGTCAACCCAAACTGATTCAAAAGAGGTTGAGGGTAGGTCTCAAAATTGTTCAGCATCAACGTATCCTAAATATCTGACACTTGAACCATCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCCTTTGGTACAGTGCACCGTGCTGAATGGCATGGATCGGATGTTGCTGTAAAGGTTCTAACGGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCGATAATGAAGCGGGTCCGCCATCCGAATGTGGTACTTTTCATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCGAGAGGTAGTCTATACCGCCTAATTCACAGACCATCTTCAGGTGAATTGATGGATCAAAGGAAAAGATTACGCATGGCGTTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAATCCCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTAGCAGGAACACCCGAGTGGATGGCTCCCGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGTCTTGGCCCAGCTCAGGTCGTGGGAGCTGTCGCTTTCCAGAATAGAAGGCTTTCTATCCCATCAAGTACTTCCCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGACGATCCGGTTCAGCGTCCATCCTTTGCAAGCATAGTGGACTCCCTAAAGAAATTGCTAAAATCTCCACAGCAGTTGATAGCAATGGGTGGAACTTCCAAATTTACTGGGAACGTATTTTTACTGCTAACTGCACTGTTCCACTACCAGGCCTGTAATCTTTATGAACCCGCAATGCTTTCTCTGAACAGCGTTGATGACTTTATTGGACTTGGAATTCAGTGCAAAGCAGTGTTTATTACAGCCATTCAAATGACAGGGGCCATGGCTTTGTCACAGCATATGCCGATCCATGGTCTCATTATGAGTTGCACTTCCAACACCCGTAATGGAATCATCGACTACACTGATTGGTAG | 3030 | 45.87 | MPHRTTYFFPRQFPDRGFDSASTSKQILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPDHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKIFSSHTAMPEEIEVGDGKENLAQRVTESYYLQLALAATLRSHASLAGDPVLMEEGREEVTDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLKTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASENTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQNCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHVSHLKEFQEPYVESCISRQIVGPKQTCGFPEPLHSGFGEHQMKGGSTLLKSSGAETDKLVDQACMGMRSSQLCLETKVSKECVLQSHIMPSTDTDASEVLGSVASATLHENKVVIEEIYRESVVAGISLNETSINPSKLSLSTQTDSKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRRLSIPSSTSPLLASLIESCWADDPVQRPSFASIVDSLKKLLKSPQQLIAMGGTSKFTGNVFLLLTALFHYQACNLYEPAMLSLNSVDDFIGLGIQCKAVFITAIQMTGAMALSQHMPIHGLIMSCTSNTRNGIIDYTDW | 1009 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6100163 | 6109325 | - | Lag0037426.1 | Lac2g0788 | 598052 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0788 | 1009 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 330 | 911 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lac2g0788 | 1009 | MobiDBLite | consensus disorder prediction | 109 | 133 | - | - | |
Lac2g0788 | 1009 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 774 | 786 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | SMART | serkin_6 | 653 | 911 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | FunFam | Serine/threonine-protein kinase CTR1 | 732 | 917 | - | - | |
Lac2g0788 | 1009 | ProSitePatterns | Protein kinases ATP-binding region signature. | 659 | 680 | IPR017441 | GO:0005524(InterPro) | |
Lac2g0788 | 1009 | ProSiteProfiles | Protein kinase domain profile. | 653 | 911 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 241 | 449 | - | - | |
Lac2g0788 | 1009 | MobiDBLite | consensus disorder prediction | 20 | 57 | - | - | |
Lac2g0788 | 1009 | SUPERFAMILY | Protein kinase-like (PK-like) | 627 | 906 | IPR011009 | - | |
Lac2g0788 | 1009 | CDD | STKc_MAP3K-like | 659 | 907 | - | - | |
Lac2g0788 | 1009 | FunFam | Serine/threonine-protein kinase isoform 1 | 643 | 731 | - | - | |
Lac2g0788 | 1009 | Gene3D | Transferase(Phosphotransferase) domain 1 | 732 | 919 | - | - | |
Lac2g0788 | 1009 | Gene3D | Phosphorylase Kinase; domain 1 | 646 | 730 | - | - | |
Lac2g0788 | 1009 | MobiDBLite | consensus disorder prediction | 25 | 40 | - | - | |
Lac2g0788 | 1009 | PRINTS | Tyrosine kinase catalytic domain signature | 768 | 786 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | PRINTS | Tyrosine kinase catalytic domain signature | 727 | 740 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | PRINTS | Tyrosine kinase catalytic domain signature | 834 | 856 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | PRINTS | Tyrosine kinase catalytic domain signature | 878 | 900 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0788 | 1009 | Pfam | Protein tyrosine and serine/threonine kinase | 653 | 907 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2241 | Lac-Chr1:43812254 | Lac2g0788 | Lac-Chr2:6100163 | 4.90E-173 | dispersed | |
Lac2g0452 | Lac-Chr2:3325129 | Lac2g0788 | Lac-Chr2:6100163 | 1.10E-117 | dispersed | |
Lac2g0788 | Lac-Chr2:6100163 | Lac3g2146 | Lac-Chr3:26804401 | 2.30E-121 | dispersed | |
Lac2g0788 | Lac-Chr2:6100163 | Lac10g2917 | Lac-Chr10:43761839 | 1.30E-177 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85993 | PF07714 | PK_Tyr_Ser-Thr | 4.00E-64 | CL0016 | Lac | PK |
Pathway information
