Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0796 ATGGCGAATGAGATACTCCAATTGGATATTCAGGATCATCATGTAGTTATGGACAATGGTATATTGCAAGTGACACTGTCCAAGCCAGATGGAAATGTTACTGGGATTAAATACAACAGCATTGACAATGTTTTAGAAGTTGACGATAGGGCATCTCATAGAGGGTACTGGGACCTTGTGTGGAACTCTGGAACTCCAGGAACAACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATCATACAAAATGAGGAACAGATAGAGCTCTCATTTAAAAGGAACTATTCATTTAAGGACAAGGAAGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCCGGATTCTACTCCTATGCCATCTTTGAGCACTTGAGGGAATGGCCACCATTCAACCTTCCTCAAACTAGGATTGTGTTTAAGCTAAGAAAAGACAAGTTTCATTATATGGCCATAGCAGATAATAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGCAAACCTTTGGACTTTCCAGAGGCTGTAATGCTAGTCAATCCTAAAGAACCTGAGTTCAAAGGAGAGGTGGATGATAAATACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTTCAGTGGGTTTCTGGCAAATCACTCCCAGCAGTGAGTTCAGATCAGGTGGACCCCTCAAGCAGAACCTAACCTCTCATGTGGGACCATATGCTCTTGCTATGTTTCTTAGCGCTCACTATTCAGGAGAGGACTTGGTACTGAAGTTCAATCCTGATGAGCCATGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACAAAGGAAGTTCAGAGCTGGCCCTATTCTTTTCCTGGTTCTGAGGATTTCCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTCCTTGACAGATATGTTAACCAAGAGCAAATGCCAGCAACCGACGCATATGTGGGACTGGCAGCACCAGGAGATGCTGGATCTTGGCAAACGGAAAACAAGGGCTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCATTTAGCATTGAGAATATTCGCATTGGCGACTACAATCTTTATGCCTGGGTTCCTGGTTTTATTGGTGATTACCGTTATGATATTGTCGTTAGCGTCTCTGCAGGTACTGATGTGGACATAGGTGATCTTGTTTATGAGCCGCCTAGGAATGGGCCCACGTTGTGGGAAATAGGCATTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTATATAAACAAATTGTATGTCAATCATCCAGATAGATTTAGGCAATATGGATTGTGGGAAAAATATGCAGAGTTATATCCTGATGCGGACTTAGTATATACAGTTGGTGTTAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTACTAGAACGAGAAACGATGGATCCCATCTGGCAACCACGTGGGAAATCAAGTTTACACTTGATAATAATATAGATAAGAGTGGCATCTATACATTGCGAGTGGCACTCGCCACTGCCAACGTTGCTGAATTACAGGTAAACAATCCAGAAGCAAAACCTGTTCTATTTACAACAGGACAGATTGGACATGACAATACAATAGCTAGGCATGGAATTCATGGACTCTATCGACTCTACGGTGTCGACATATCGGGATCGCTACTGGTGGAAGGAGAAAACACCATCTTCCTTTCACAAGTTATAAGCAGTTCAGCCTTCAATGGCGTCATGTATGATTATATCCGCCTTGAAGGCCCTCCATCTGATGCCCCTACAGATTCATAA 1917 42.31 MANEILQLDIQDHHVVMDNGILQVTLSKPDGNVTGIKYNSIDNVLEVDDRASHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVIIQNEEQIELSFKRNYSFKDKEVPLNIDKRFIMLRNSSGFYSYAIFEHLREWPPFNLPQTRIVFKLRKDKFHYMAIADNRQRFMPLPEDRLRHRGKPLDFPEAVMLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPSVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAMFLSAHYSGEDLVLKFNPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPGSEDFPPPNQRGRLTGKLFVLDRYVNQEQMPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFSIENIRIGDYNLYAWVPGFIGDYRYDIVVSVSAGTDVDIGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDADLVYTVGVSDYTKDWFFAHVTRTRNDGSHLATTWEIKFTLDNNIDKSGIYTLRVALATANVAELQVNNPEAKPVLFTTGQIGHDNTIARHGIHGLYRLYGVDISGSLLVEGENTIFLSQVISSSAFNGVMYDYIRLEGPPSDAPTDS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6230649 6235640 - Lag0037434.1 Lac2g0796 598060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0796 638 CDD RGL4_M 331 430 IPR029413 -
Lac2g0796 638 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Lac2g0796 638 Pfam Polysaccharide lyase family 4, domain II 355 425 IPR029413 -
Lac2g0796 638 CDD RGL4_C 442 628 - -
Lac2g0796 638 SUPERFAMILY Galactose-binding domain-like 437 628 IPR008979 -
Lac2g0796 638 Gene3D - 438 628 - -
Lac2g0796 638 SUPERFAMILY Galactose mutarotase-like 12 291 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac2g0796 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 631 IPR051850 -
Lac2g0796 638 SUPERFAMILY Starch-binding domain-like 328 427 IPR013784 GO:0030246(InterPro)
Lac2g0796 638 CDD RGL4_N 14 301 - -
Lac2g0796 638 Gene3D - 7 278 IPR014718 GO:0030246(InterPro)
Lac2g0796 638 Pfam Polysaccharide lyase family 4, domain III 440 627 IPR029411 -
Lac2g0796 638 Gene3D - 328 428 - -
Lac2g0796 638 FunFam Rhamnogalacturonate lyase B 328 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0796 Lac-Chr2:6230649 Lac2g0798 Lac-Chr2:6247878 7.10E-270 dispersed
Lac2g0796 Lac-Chr2:6230649 Lac2g0797 Lac-Chr2:6237042 6.50E-255 tandem
Lac1g2760 Lac-Chr1:48756583 Lac2g0796 Lac-Chr2:6230649 3.30E-212 wgd
Lac2g0796 Lac-Chr2:6230649 Lac5g1848 Lac-Chr5:36687020 2.10E-221 wgd
Lac2g0796 Lac-Chr2:6230649 Lac6g0987 Lac-Chr6:8946403 1.30E-260 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0796 K18195 - csv:101204193 1239.17