Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0797 ATGGCCGACCGATGGCCTCGGCCTCAACGTTTCGGCGTCTCCATTGCAACTTCGCATTCACAACCAACATGTAAAATGCTCGTTGTGATGGACAATGGGATAATTGCGGTTACGATATCGAATCCAGAGGGAATGGTCACCGGAGTGGAGTACAATGGGATTGAAAACTTGCTTGAGGTTGCCAATGGTGAAGATGATAGAGGATATTGGGACGTTGTTTGGAATGTCGCAGGAAGTGCAGGAACCAAGGGCATTTTCGATCGAATTGAAGGAACAGATTTCAAGGTAATCGTGGAAAATGACGTACAAATCGAACTCTCGTTCAGCAGAACTTACAATTCATCCGCCGGAGGCGATGTCATTCCCTTGAACATCGACAAAAGGTTCGTGTTGCTCCGTAATTCATCAGGATTCTATTCGTACGCCATTTACGAACACTTGAAAGAATGGCCGGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCCCCGAAAGGACAAGTTTCGGTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTGCCCGAGGATCGGAAGCCACCGCGAGGAGAAGCCCTAGCTTATCCAGAGGCCGTCCTCCTGGTTGATCCTGTAGAGCCTGAGTTCAAGGGAGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGACGCTCCCGTTCACGGGTGGATATCCGCCGATCCGCCCATTGGCCTTTGGCAAATCGCAGCCAGTGAGGAGTTTCGCTCCGGCGGGCCCCTCAAACAGTTTCTCACCTCCCATGTCGGTCCCACCACCCTTACAGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTGATGAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTGTCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCTCTAAGACTTTGGCAAAATGCCAAAGAACAGATGATGATTGAAGCTCAAAGCTGGCCTTACAGTTTCCCTGCTTCTGAGGATTTTCTTAAATCAGATCAGCGAGGCACTGTCAGCGGCAGATTGATGATCCGTGAGAGATTTGTGAGTGATGAATCCATGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACAGAAAGTAAGGGCTACCAATTCTGGACTAGAGCAGATGAAAATGGACATTTCTCTTTGAATAATGTTCACAGTGGAAATTTTAGTCTTTATGGATGGGTCCCTAATTTTATTGGCAATTACCAATACAATACTTTCATCACCGTAACACCAGGCAGTGATATCAATGTGGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACGTTATGGGAAATAGGCATTCCTGATCGTACGGCTGCAGAATTCTATGTACCAGATCCTAATCCAAAGTATATTAATAAACTGTATGTCAATCATTCAGATAGGTTTAGACAGTATGGATTATGGGAAAGATACACAGAATTATATCCTAAAGAGGATCTAGTTTATACAGTCGGCCTTAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCAGGAACTACTTGGAAAATCAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTTCGTCTTGCATTGGCAACTGCACAAGGTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCACCATTATTCACGTCTGGATTGATTGGAAAGGACAACACTATAGCTAGACATGGAATTCATGGTCTCTATCGGCTGTACACTGTTGACATTCCGGGCTGTGAGCTTGTGGTGGGCAACAATACAATTCTTCTTACACAGACAAGTAGCAACAGTCCTTTTGTGGGGATTATGTATGATTATCTTCGTTTAGAAGGACCATTAACTTCCAAAATGTAA 1959 45.18 MADRWPRPQRFGVSIATSHSQPTCKMLVVMDNGIIAVTISNPEGMVTGVEYNGIENLLEVANGEDDRGYWDVVWNVAGSAGTKGIFDRIEGTDFKVIVENDVQIELSFSRTYNSSAGGDVIPLNIDKRFVLLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKPRKDKFRYMAVADKRQRFMPLPEDRKPPRGEALAYPEAVLLVDPVEPEFKGEVDDKYQYGCESKDAPVHGWISADPPIGLWQIAASEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVMKFGSNEPWKKVFGPVFIHLNSLPEGEDPLRLWQNAKEQMMIEAQSWPYSFPASEDFLKSDQRGTVSGRLMIRERFVSDESMPASGAYVGLALPGELGSWQTESKGYQFWTRADENGHFSLNNVHSGNFSLYGWVPNFIGNYQYNTFITVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDRFRQYGLWERYTELYPKEDLVYTVGLSDYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAQGAELQVRLNDAQALPPLFTSGLIGKDNTIARHGIHGLYRLYTVDIPGCELVVGNNTILLTQTSSNSPFVGIMYDYLRLEGPLTSKM 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6237042 6243316 - Lag0037435.1 Lac2g0797 598061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0797 652 Pfam Rhamnogalacturonate lyase family 23 216 IPR010325 -
Lac2g0797 652 CDD RGL4_M 347 446 IPR029413 -
Lac2g0797 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 25 647 IPR051850 -
Lac2g0797 652 CDD RGL4_C 458 645 - -
Lac2g0797 652 Gene3D - 344 444 - -
Lac2g0797 652 CDD RGL4_N 28 307 - -
Lac2g0797 652 SUPERFAMILY Galactose-binding domain-like 453 645 IPR008979 -
Lac2g0797 652 Pfam Polysaccharide lyase family 4, domain III 456 644 IPR029411 -
Lac2g0797 652 SUPERFAMILY Starch-binding domain-like 345 444 IPR013784 GO:0030246(InterPro)
Lac2g0797 652 Gene3D - 17 300 IPR014718 GO:0030246(InterPro)
Lac2g0797 652 Pfam Polysaccharide lyase family 4, domain II 370 442 IPR029413 -
Lac2g0797 652 FunFam Rhamnogalacturonate lyase B 344 443 - -
Lac2g0797 652 Gene3D - 454 645 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0797 Lac-Chr2:6237042 Lac6g0987 Lac-Chr6:8946403 3.80E-258 dispersed
Lac2g0796 Lac-Chr2:6230649 Lac2g0797 Lac-Chr2:6237042 6.50E-255 tandem
Lac2g0797 Lac-Chr2:6237042 Lac2g0798 Lac-Chr2:6247878 1.30E-258 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0797 K18195 - csv:101203789 1161.36