Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0798 ATGTCGTCCACGGGAGTGCGATTGCAGATACGAGATCGTCATGTGGTGGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATCATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGTTATTGGGATCTCGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAAAGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTTTGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTTGTTCCTTTGAATATCGACAAAAGGTTCATAGTGCTACGTGGTTCCTCTGGTTTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGGATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCGGAAGCTGTCCTGCTTTCCAATCCTAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAAGGACTTAAAGGTCCATGGATGGATAAGCACCAATCCATCCATCGGGTTTTGGCAGATTACACCGAGTGATGAATTTCGATCGGGTGGGCCTCATAAGCAAAGTCTAACATCCCATGTGGGACCTACAACCCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACTTCAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCTGAAGTCCAAAGTTGGCCGTATAGTTTCCCTGCATCTGAGGATTACCCGAAAGTGGATCAACGGGGTACTGTTAGCGGTAGGCTTCTGGTTTTTGACAGGTATATGAGTCAAGACCATCTTCCAGCCAGTGGAGCCTTTGTCGGATTGTCTGCACCAGGAGAAGTTGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTCGAGCAGATGATCGTGGTTATTTTACCATCGACCACATACACACCGGTGACTACAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCCTCGTCAACGTAAACCAAGGATCTTGCATTGAAATGGGTGATCTTGTTTATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAACCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGACAGGTTCCGGCAGTATGGGTTGTGGGACAGATATGCGGAATTATACCCGGACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGACAGAGTGGATCACAAGAGTATGTTTACGCTACGAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTCCGGGTTAACGATCCGAGATCGAGGCGACCTTTGTTCACGAGCGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGTCATAGCAGGCTCTCATCTTGTTGAAGGAGATAACACAATTTTCTTCACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAATCTTTGCTAA 1911 44.53 MSSTGVRLQIRDRHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSSFRVIVENEEQVELSFLRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLAYPEAVLLSNPKNPQLKGEVDDKYQYSCENKDLKVHGWISTNPSIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSAGDDPFWLWEDAKIQMMAEVQSWPYSFPASEDYPKVDQRGTVSGRLLVFDRYMSQDHLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFTIDHIHTGDYNLYAWVPGFIGDYRCDALVNVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNSNSHEGTTWQIKFKLDRVDHKSMFTLRVAIASATLAELQVRVNDPRSRRPLFTSGLIGRDNSIARHGIHGIYWLYSVVIAGSHLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPTNLC 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6247878 6252909 - Lag0037436.1 Lac2g0798 598062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0798 636 CDD RGL4_M 331 430 IPR029413 -
Lac2g0798 636 CDD RGL4_N 6 297 - -
Lac2g0798 636 CDD RGL4_C 442 629 - -
Lac2g0798 636 Pfam Rhamnogalacturonate lyase family 4 200 IPR010325 -
Lac2g0798 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Lac2g0798 636 SUPERFAMILY Galactose mutarotase-like 12 296 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lac2g0798 636 Gene3D - 329 425 - -
Lac2g0798 636 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Lac2g0798 636 FunFam Rhamnogalacturonate lyase B 328 427 - -
Lac2g0798 636 Gene3D - 438 629 - -
Lac2g0798 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Lac2g0798 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 632 IPR051850 -
Lac2g0798 636 Gene3D - 7 304 IPR014718 GO:0030246(InterPro)
Lac2g0798 636 SUPERFAMILY Starch-binding domain-like 328 423 IPR013784 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2760 Lac-Chr1:48756583 Lac2g0798 Lac-Chr2:6247878 3.30E-220 dispersed
Lac1g3205 Lac-Chr1:52095092 Lac2g0798 Lac-Chr2:6247878 9.80E-203 dispersed
Lac2g0796 Lac-Chr2:6230649 Lac2g0798 Lac-Chr2:6247878 7.10E-270 dispersed
Lac2g0798 Lac-Chr2:6247878 Lac6g0987 Lac-Chr6:8946403 4.60E-293 dispersed
Lac2g0797 Lac-Chr2:6237042 Lac2g0798 Lac-Chr2:6247878 1.30E-258 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0798 K18195 - csv:101203947 1244.18