Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0798 | ATGTCGTCCACGGGAGTGCGATTGCAGATACGAGATCGTCATGTGGTGGTGGATAATGGAATACTGCAACTAACTTTATCAAAACCAGATGGAATCATCACTGGCATACGATATAATGGTGTTGACAATCTGCTTGAAGTTCTCAACCCTGAATCTAACAGAGGTTATTGGGATCTCGTTTGGAATTCTCCAGGAAGCAAGGGAATATTTGACGTGATTAAAGGATCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTTTGAGGATGTGGGATCCCTCCCTCGAGGGCAAGTTTGTTCCTTTGAATATCGACAAAAGGTTCATAGTGCTACGTGGTTCCTCTGGTTTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTTGATATTGGTGAAACCAGGATCACTTTTAAACTCAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAACAGGCAGAGATTGATGCCCCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTACCCGGAAGCTGTCCTGCTTTCCAATCCTAAGAACCCTCAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAAGGACTTAAAGGTCCATGGATGGATAAGCACCAATCCATCCATCGGGTTTTGGCAGATTACACCGAGTGATGAATTTCGATCGGGTGGGCCTCATAAGCAAAGTCTAACATCCCATGTGGGACCTACAACCCTTGCTATATTTCTTAGTACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTTTATCTTAATTCCACTTCAGCTGGAGATGATCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCTGAAGTCCAAAGTTGGCCGTATAGTTTCCCTGCATCTGAGGATTACCCGAAAGTGGATCAACGGGGTACTGTTAGCGGTAGGCTTCTGGTTTTTGACAGGTATATGAGTCAAGACCATCTTCCAGCCAGTGGAGCCTTTGTCGGATTGTCTGCACCAGGAGAAGTTGGGTCATGGCAGAGAGAATGCAAGGGATATCAATTCTGGACTCGAGCAGATGATCGTGGTTATTTTACCATCGACCACATACACACCGGTGACTACAATCTATATGCATGGGTCCCTGGCTTCATTGGAGATTACCGTTGCGATGCCCTCGTCAACGTAAACCAAGGATCTTGCATTGAAATGGGTGATCTTGTTTATGAACCTCCAAGAGATGGGCCCACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAACCCAATGCATATTAATAAGCTCTTTGTAAATCATCCTGACAGGTTCCGGCAGTATGGGTTGTGGGACAGATATGCGGAATTATACCCGGACGAGGATTTAGTATACACGGTTGGCACAAGTGATTATAGTAAAGATTGGTTCTTTGCTCAGGTCCCTAGGAAGACAAACAGTAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGACAGAGTGGATCACAAGAGTATGTTTACGCTACGAGTCGCAATCGCATCTGCAACTCTTGCTGAATTGCAGGTCCGGGTTAACGATCCGAGATCGAGGCGACCTTTGTTCACGAGCGGGTTGATAGGGAGAGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGCTTTACAGCGTGGTCATAGCAGGCTCTCATCTTGTTGAAGGAGATAACACAATTTTCTTCACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAATCTTTGCTAA | 1911 | 44.53 | MSSTGVRLQIRDRHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGIFDVIKGSSFRVIVENEEQVELSFLRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTLAYPEAVLLSNPKNPQLKGEVDDKYQYSCENKDLKVHGWISTNPSIGFWQITPSDEFRSGGPHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSAGDDPFWLWEDAKIQMMAEVQSWPYSFPASEDYPKVDQRGTVSGRLLVFDRYMSQDHLPASGAFVGLSAPGEVGSWQRECKGYQFWTRADDRGYFTIDHIHTGDYNLYAWVPGFIGDYRCDALVNVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPMHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYSKDWFFAQVPRKTNSNSHEGTTWQIKFKLDRVDHKSMFTLRVAIASATLAELQVRVNDPRSRRPLFTSGLIGRDNSIARHGIHGIYWLYSVVIAGSHLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPTNLC | 636 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6247878 | 6252909 | - | Lag0037436.1 | Lac2g0798 | 598062 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0798 | 636 | CDD | RGL4_M | 331 | 430 | IPR029413 | - | |
Lac2g0798 | 636 | CDD | RGL4_N | 6 | 297 | - | - | |
Lac2g0798 | 636 | CDD | RGL4_C | 442 | 629 | - | - | |
Lac2g0798 | 636 | Pfam | Rhamnogalacturonate lyase family | 4 | 200 | IPR010325 | - | |
Lac2g0798 | 636 | Pfam | Polysaccharide lyase family 4, domain III | 440 | 628 | IPR029411 | - | |
Lac2g0798 | 636 | SUPERFAMILY | Galactose mutarotase-like | 12 | 296 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Lac2g0798 | 636 | Gene3D | - | 329 | 425 | - | - | |
Lac2g0798 | 636 | Pfam | Polysaccharide lyase family 4, domain II | 354 | 425 | IPR029413 | - | |
Lac2g0798 | 636 | FunFam | Rhamnogalacturonate lyase B | 328 | 427 | - | - | |
Lac2g0798 | 636 | Gene3D | - | 438 | 629 | - | - | |
Lac2g0798 | 636 | SUPERFAMILY | Galactose-binding domain-like | 437 | 629 | IPR008979 | - | |
Lac2g0798 | 636 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 632 | IPR051850 | - | |
Lac2g0798 | 636 | Gene3D | - | 7 | 304 | IPR014718 | GO:0030246(InterPro) | |
Lac2g0798 | 636 | SUPERFAMILY | Starch-binding domain-like | 328 | 423 | IPR013784 | GO:0030246(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2760 | Lac-Chr1:48756583 | Lac2g0798 | Lac-Chr2:6247878 | 3.30E-220 | dispersed | |
Lac1g3205 | Lac-Chr1:52095092 | Lac2g0798 | Lac-Chr2:6247878 | 9.80E-203 | dispersed | |
Lac2g0796 | Lac-Chr2:6230649 | Lac2g0798 | Lac-Chr2:6247878 | 7.10E-270 | dispersed | |
Lac2g0798 | Lac-Chr2:6247878 | Lac6g0987 | Lac-Chr6:8946403 | 4.60E-293 | dispersed | |
Lac2g0797 | Lac-Chr2:6237042 | Lac2g0798 | Lac-Chr2:6247878 | 1.30E-258 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0798 | K18195 | - | csv:101203947 | 1244.18 |