Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0801 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGGAGGAGCGGACTGCTGAAGAAGGCGAAAGAACTGGCGATCCTTTGCGACGCGGATGTTGGAGTCATCATCTTCTCAAGCACCAGCAAGCTTTATGAATACTCCAGTACCAGCATGAAAACACTAATAGAACGATATAACAAAACAAAGGAGGAGCACCATCAGCTTGGGGTCTCGACTTCTGAAGTCAAGTACTGGCAAAGGGAAGCAGCAATGTTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGCCTGAGCGTCAAAGATCTACAGAATCTAGAAAATCAACTGGAGATAAGTCTCCGTGGTGTCCGTATGAAGAAGGATCAAATCTTAATGGATGAGATACAAGACCTAAACAGAAAGGGAAACTTGATTCACCAAGACAATTTGGAACTTTATAAGAAGGTAAACATAATTCGTCAAGAAAACTTGGAATTATACAAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCACATATGAGCAGTCTTACAAACGGACTTGGTGTTGGAGAGGATGCAGGCATACCTATCAACCTTCAACTCAGCCAACCACAGCAACAAGAGCATGAGGCACCGGAAAGAGCTACAAAACTGGGGTACAATTGTGACAAATTTCATAAATGTTCAATAATGAATACACATGAACTTTTCCAGAGTCACTATTCCAATCTTGTTCTTTTGATGGTTGCAGCAGACTACAACTACGCTAACAAAAAGAGACCTTACACCAACCAGGAAGATGTTTCTTATTTTGCATCAAGAAAACGGTGTAAGGTTGCAAATTGTCTTTCAATCAACGAAATGTGGTAG 915 42.4 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEHHQLGVSTSEVKYWQREAAMLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKDQILMDEIQDLNRKGNLIHQDNLELYKKVNIIRQENLELYKKVYGTKDANGAHMSSLTNGLGVGEDAGIPINLQLSQPQQQEHEAPERATKLGYNCDKFHKCSIMNTHELFQSHYSNLVLLMVAADYNYANKKRPYTNQEDVSYFASRKRCKVANCLSINEMW 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6274321 6289954 + Lag0037439.1 Lac2g0801 598065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0801 304 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac2g0801 304 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 Coils Coil 86 113 - -
Lac2g0801 304 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac2g0801 304 Gene3D - 13 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac2g0801 304 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac2g0801 304 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lac2g0801 304 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0801 304 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0492 Lac-Chr11:5108541 Lac2g0801 Lac-Chr2:6274321 1.40E-32 dispersed
Lac2g0801 Lac-Chr2:6274321 Lac6g0810 Lac-Chr6:6986829 1.30E-32 dispersed
Lac2g0174 Lac-Chr2:1321950 Lac2g0801 Lac-Chr2:6274321 1.10E-23 transposed
Lac5g2657 Lac-Chr5:45040827 Lac2g0801 Lac-Chr2:6274321 6.90E-64 transposed
Lac1g2759 Lac-Chr1:48747636 Lac2g0801 Lac-Chr2:6274321 3.80E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23473 PF01486 K-box 6.60E-26 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0801 K09264 - csv:101203545 428.713