Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0808 ATGGAGTTGAATGAACATTATTTGTTAGATGAACTTTTAGCTTTGAGAAGAGAAATGAACTGGGAATTAGCAATGCCCACGGAAATGAACGAGCTAATTTCCAGTGCAAATGGCTGGAATTTTGACTGCTCTGATTCTTCTTCATCTGCAGCCTTCTCTTTACCGATCGATCACCAGAATTTTAGTTATCTTCTCAGTGGGCAAGGGCAGTATTCTTTGGCCGGCGACCAATTTGCGGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGTCGTATAGTACGTTGGAGACTACGCCGAGTTGTTTTGAGGTTTACAATGGGGAGTATCCTATTACGAATATGGAAGAGGAGGAGCTCGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCCAGTTGTAAAGTCGAGCCTGTTCATTCTCCTGAAATTATTCTCCCCGTTTTCAACACGCCCGGCACGTGCGATTTCGGCCAAAAAATCGCCAGTTCGTCGAGTAAGAAACTCCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAACGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCGATTGATTACGTGAAGGAATTGCTGGAGAAAATAAACAATTTGCAAAGGGAAATTGAGGTGGGGAATAATAATGGGAGTAAATTGGAGTCGACGATGGGAATTTTGAGAGATGTGAAACCGAATGAGTATTTGGTCAGAAATTCACCCAAGTTTAATGTGGAAAGGAGAGAGGGGGACACTCGGATTGAGATTTGCTGTGCGGCAAAGCCAGGATTGGTGTTGTCGACAGTGCACACTCTTGAAGCGTTGGGGCTTGATATTCAGCAGTGTGTCATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCCGAGGGAACGGAGCACAGAACAATTGTGAGCACAGAAGAAGTAAAGCAAGCATTATTCGAAAATGCTGGATATGGAGGAAGATGTCTGTAG 1047 46.13 MELNEHYLLDELLALRREMNWELAMPTEMNELISSANGWNFDCSDSSSSAAFSLPIDHQNFSYLLSGQGQYSLAGDQFAAAAAASTGDSMSYSTLETTPSCFEVYNGEYPITNMEEEELGILEDEIHNLEVQASCKVEPVHSPEIILPVFNTPGTCDFGQKIASSSSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKINNLQREIEVGNNNGSKLESTMGILRDVKPNEYLVRNSPKFNVERREGDTRIEICCAAKPGLVLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEGTEHRTIVSTEEVKQALFENAGYGGRCL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6378004 6380054 + Lag0037446.1 Lac2g0808 598072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0808 348 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 161 343 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac2g0808 348 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Lac2g0808 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Lac2g0808 348 Pfam Plant bHLH transcription factor, ACT-like domain 266 337 IPR054502 -
Lac2g0808 348 CDD ACT_UUR-ACR-like 274 337 - -
Lac2g0808 348 Pfam Helix-loop-helix DNA-binding domain 179 221 IPR011598 GO:0046983(InterPro)
Lac2g0808 348 Coils Coil 112 132 - -
Lac2g0808 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 239 IPR036638 GO:0046983(InterPro)
Lac2g0808 348 Coils Coil 211 238 - -
Lac2g0808 348 Gene3D - 165 238 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0808 Lac-Chr2:6378004 Lac6g1040 Lac-Chr6:9489029 1.60E-90 dispersed
Lac10g0613 Lac-Chr10:4711912 Lac2g0808 Lac-Chr2:6378004 8.80E-35 transposed
Lac6g2250 Lac-Chr6:39503693 Lac2g0808 Lac-Chr2:6378004 1.20E-10 transposed
Lac1g2750 Lac-Chr1:48689311 Lac2g0808 Lac-Chr2:6378004 4.40E-77 wgd
Lac2g0808 Lac-Chr2:6378004 Lac5g1857 Lac-Chr5:36810156 1.10E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23474 PF00010 HLH 8.20E-10 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0808 - - - 0.0