Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0808 | ATGGAGTTGAATGAACATTATTTGTTAGATGAACTTTTAGCTTTGAGAAGAGAAATGAACTGGGAATTAGCAATGCCCACGGAAATGAACGAGCTAATTTCCAGTGCAAATGGCTGGAATTTTGACTGCTCTGATTCTTCTTCATCTGCAGCCTTCTCTTTACCGATCGATCACCAGAATTTTAGTTATCTTCTCAGTGGGCAAGGGCAGTATTCTTTGGCCGGCGACCAATTTGCGGCGGCGGCGGCGGCGAGTACCGGCGATTCGATGTCGTATAGTACGTTGGAGACTACGCCGAGTTGTTTTGAGGTTTACAATGGGGAGTATCCTATTACGAATATGGAAGAGGAGGAGCTCGGGATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCCAGTTGTAAAGTCGAGCCTGTTCATTCTCCTGAAATTATTCTCCCCGTTTTCAACACGCCCGGCACGTGCGATTTCGGCCAAAAAATCGCCAGTTCGTCGAGTAAGAAACTCCAGGGGCAGCCGTCGAAGAATCTCATGGCGGAGAGACGGCGGAGGAAGCGCCTCAACGATCGCCTCTCCATGCTCCGATCCATTGTCCCCAAAATCAGCAAGATGGATAGAACTGCGATTCTTGCGGATGCGATTGATTACGTGAAGGAATTGCTGGAGAAAATAAACAATTTGCAAAGGGAAATTGAGGTGGGGAATAATAATGGGAGTAAATTGGAGTCGACGATGGGAATTTTGAGAGATGTGAAACCGAATGAGTATTTGGTCAGAAATTCACCCAAGTTTAATGTGGAAAGGAGAGAGGGGGACACTCGGATTGAGATTTGCTGTGCGGCAAAGCCAGGATTGGTGTTGTCGACAGTGCACACTCTTGAAGCGTTGGGGCTTGATATTCAGCAGTGTGTCATTAGCTGTTTCAATGACTTTGCAATTCAAGCTTCTTGTTCCGAGGGAACGGAGCACAGAACAATTGTGAGCACAGAAGAAGTAAAGCAAGCATTATTCGAAAATGCTGGATATGGAGGAAGATGTCTGTAG | 1047 | 46.13 | MELNEHYLLDELLALRREMNWELAMPTEMNELISSANGWNFDCSDSSSSAAFSLPIDHQNFSYLLSGQGQYSLAGDQFAAAAAASTGDSMSYSTLETTPSCFEVYNGEYPITNMEEEELGILEDEIHNLEVQASCKVEPVHSPEIILPVFNTPGTCDFGQKIASSSSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIDYVKELLEKINNLQREIEVGNNNGSKLESTMGILRDVKPNEYLVRNSPKFNVERREGDTRIEICCAAKPGLVLSTVHTLEALGLDIQQCVISCFNDFAIQASCSEGTEHRTIVSTEEVKQALFENAGYGGRCL | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6378004 | 6380054 | + | Lag0037446.1 | Lac2g0808 | 598072 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0808 | 348 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 161 | 343 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Lac2g0808 | 348 | SMART | finulus | 178 | 227 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0808 | 348 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 221 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0808 | 348 | Pfam | Plant bHLH transcription factor, ACT-like domain | 266 | 337 | IPR054502 | - | |
Lac2g0808 | 348 | CDD | ACT_UUR-ACR-like | 274 | 337 | - | - | |
Lac2g0808 | 348 | Pfam | Helix-loop-helix DNA-binding domain | 179 | 221 | IPR011598 | GO:0046983(InterPro) | |
Lac2g0808 | 348 | Coils | Coil | 112 | 132 | - | - | |
Lac2g0808 | 348 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 176 | 239 | IPR036638 | GO:0046983(InterPro) | |
Lac2g0808 | 348 | Coils | Coil | 211 | 238 | - | - | |
Lac2g0808 | 348 | Gene3D | - | 165 | 238 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0808 | Lac-Chr2:6378004 | Lac6g1040 | Lac-Chr6:9489029 | 1.60E-90 | dispersed | |
Lac10g0613 | Lac-Chr10:4711912 | Lac2g0808 | Lac-Chr2:6378004 | 8.80E-35 | transposed | |
Lac6g2250 | Lac-Chr6:39503693 | Lac2g0808 | Lac-Chr2:6378004 | 1.20E-10 | transposed | |
Lac1g2750 | Lac-Chr1:48689311 | Lac2g0808 | Lac-Chr2:6378004 | 4.40E-77 | wgd | |
Lac2g0808 | Lac-Chr2:6378004 | Lac5g1857 | Lac-Chr5:36810156 | 1.10E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23474 | PF00010 | HLH | 8.20E-10 | No_clan | Lac | TF |
Pathway information
