Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0816 ATGTCGTCTCTACATTTTTTCTACCTTCTCTCTCTTTTCACCTTGCTCACTGGAATCAAGTCTGCTGACGAGCGTCAAATTCTGACCAAACTCAAATCCAGTCTCCATAATTCAAACACCAATGTTTTTGACGACTGGGGACTTGAAAATCCCATCTGCAACTTCACTGGAATCACCTGTAATTCAGAGAAATTCGTCAGGGAAATTGACCTCTCCGGAAGGGGTTTATCTGGGGTTGTTCCTTTTGATTCCATTTGTCAGTTGAAGTCATTGGAGAAGCTGGCTTTTGGGTTCAATTCCTTGCATGGTGAAGCAACCCAGGATTTGAACAATTGTATCAAATTGAAGTATTTGGATCTTGGTACCAATTCCTTCTCCGGATCCTTCCCTGACATACATTCTTTGAGTGAGTTGCAGTATCTGTACTTGAATTTAAGTGGGTTTTCGGGGAAGTTTCCATGGAAATCAGTTGGGAATTTGACTGGTTTGATTCAGCTCAGCCTTGGGGATAACCCTTTTGACAACACTACGTTTCCAGTGGAGGTCACCAATTTGAAGAAACTCAATTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATTCCAAGGTCTATAGGTAATCTCACAGAGCTTCTTAATTTGGAATTTTCAGACAATTATGTCACAGGGACAATTCCGGCGGAGATTGGGAACCTGCACAATCTATGGCAGTTGGAGTTTTACAACAATCAATTAACAGGGACACTTCCAGTGGGGTTGAGAAACCTAACCAGGCTAAAGAATTTCGACGCTTCGATAAATTATATCCATGGGGATCTATCGGAGTTGAGGTTTTTGACGAACCTGGTTACTCTGCAAATCTTTGACAACCAAATCTCCGGCCAAGTTCCGGTGGAGTTTGGTGAGTTCAAGTCGCTTGTGAATCTCTCCCTTTACAAGAACATGCTTACAGGTCCTCTTCCGCAATCGATTGGTTCTTGGACCAACTTTTGTTACATTGATGCATCTGAGAATTTCTTGACGGGCTCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCGGAAGCTTCTCATTCTTCAGAACAATTTCACCGGCGAAATTCCGGCGACCTACGCTAATTGCCCCACTTTAACCCGATTTAGAGTCAGTCAGAACTCGCTCAGCGGCGTCGTACCGGCCGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGCGTCGAATCAATTGGAAGGTTCGATCACTTCCGATATCGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAATCGGTTTTCAGGTCGATTGCCATTGGAGATTTCGCAAGCGAAATCTCTCGCGTCGGTTGATCTGAGCAATAATCAATTCTCCGATGAAATTCCGACGACTATCGGTGACCTGAAGAATCTCGATAGCTTCGAATTACAGAGCAATAAATTCTCCGGTTCGATTCCAGAGACGATCGGCTCGTGTAATTCCCTAAGTATTGTGAATCTCGCGGGGAATTTCTTCTCTGGAAAAATTCCTTCGTCTCTAGGGTTTCTTCCTGTTCTAAACTCTTTGAATCTCTCCAATAACGACCTCTCTGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTAAGTCTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAATCGCTCTCGAACGGAGCTTACAAAGAAAGCTTCGCCGGAAACCCTGGCCTCTGTAGTGAGACCGATGGCTTTCTACGGCGATGTTCACAGAGTTCCGGCGCGCCCAAAGACGTCCGAATTCTCGTCATCTGTTTCGCCGTCGGATTGCTTCTTCTCGGCGTGACGCTATGGTGCTTCATAAACTTGAAAAAGAGCGAAAAAGATAGAGATCGATCACTTAAAGAGGAATCGTGGGACCTGAAATCCTTCCACGTAATGACGTTTACAGAGGACGAGATCCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAGGGAGGTTCCGGCAACGTTTACAAAGTAACCGTCGGAAACGGGAAAGAGCTCGCCGTGAAGCATATATGGAACACCGATCCGTACGACGGCAAGAAGAATAATCGGAGCTCATCGCCGATTCTCCTGAAACAAAGAACGAAGTCGTCGGAATTCGACTCGGAAGTGAAGACTCTGAGCTCGATCCGCCATGTGAACGTGGTGAAGCTCTACTGCAGCATTACGAGCGAGGTTTCGAGCCTGTTGGTTTACGAATATATGCCGAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATCGCCGTCGGAGCGGCGAAAGGATTGGAGTATCTTCATCACGGCTGTGATCGGCCGGTGATCCACCGGGATGTCAAGTCCAGTAACATACTTTTGGATGAATTTCTCAAGCCCAGAATTGCCGATTTTGGGCTTGCCAAAATTCTTCATAGAAATGGGTTCAACGACACCACCCATGTCATTGCAGGCACCCCGGGCTACATCGCTCCAGAGTATGGATACACCTATAAAGTCGACGAGAAGAGTGATGTGTATAGTTTTGGAGTTGTGTTGATGGAGTTGGTCAGCGGAAAAAAGGCAATAGAGGCGGAGTTTGGAGAGAATAAGGATATTGTGCAATGGGTGGCAAACAATTTGAAGACTAGAGAGAGTGTGTTGAGCTTGGTAGATTCGAGAATCCCAGATGCATTTAAAGAAGATGCTATTAAGGTATTGAGAATTGCTATCTTGTGCACAGCCAGACTGCCGACATTGAGACCCACGATGAGAAGTGTGGTTCAAATGCTTGAAGAAGCCCAACCGTGTCGTCTAGTTGGAATTGTGATAAGCAAAGATAATGCGACCGGAAGAGACGACCGATTTCGGAAACCTGAGATGCGTTATTTTTCAAAAACAAAAACGAAAGAGGCGACCGGAAGAGATCCTGAAATCCGGCGACGATCACTGATAGAGGCAACCGATTTCGGAAGAAGCGTCGACGATTGGAAGAGGCGATCGATTTCGGAACGGAAGAGGCGTCGTCAATCCGTCGATACCAAGTGA 3093 45.62 MSSLHFFYLLSLFTLLTGIKSADERQILTKLKSSLHNSNTNVFDDWGLENPICNFTGITCNSEKFVREIDLSGRGLSGVVPFDSICQLKSLEKLAFGFNSLHGEATQDLNNCIKLKYLDLGTNSFSGSFPDIHSLSELQYLYLNLSGFSGKFPWKSVGNLTGLIQLSLGDNPFDNTTFPVEVTNLKKLNWLYLSNCSLTGEIPRSIGNLTELLNLEFSDNYVTGTIPAEIGNLHNLWQLEFYNNQLTGTLPVGLRNLTRLKNFDASINYIHGDLSELRFLTNLVTLQIFDNQISGQVPVEFGEFKSLVNLSLYKNMLTGPLPQSIGSWTNFCYIDASENFLTGSIPPDMCKKGTMRKLLILQNNFTGEIPATYANCPTLTRFRVSQNSLSGVVPAGIWGLPNVNIIDLASNQLEGSITSDIGKAVALSELYIGNNRFSGRLPLEISQAKSLASVDLSNNQFSDEIPTTIGDLKNLDSFELQSNKFSGSIPETIGSCNSLSIVNLAGNFFSGKIPSSLGFLPVLNSLNLSNNDLSGEIPSTFSHLKLSLLDLSNNQLTGPVPQSLSNGAYKESFAGNPGLCSETDGFLRRCSQSSGAPKDVRILVICFAVGLLLLGVTLWCFINLKKSEKDRDRSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKELAVKHIWNTDPYDGKKNNRSSSPILLKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHRNGFNDTTHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIEAEFGENKDIVQWVANNLKTRESVLSLVDSRIPDAFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLVGIVISKDNATGRDDRFRKPEMRYFSKTKTKEATGRDPEIRRRSLIEATDFGRSVDDWKRRSISERKRRRQSVDTK 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6461500 6465546 + Lag0037454.1 Lac2g0816 598080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0816 1030 Gene3D Transferase(Phosphotransferase) domain 1 753 955 - -
Lac2g0816 1030 ProSitePatterns Protein kinases ATP-binding region signature. 665 687 IPR017441 GO:0005524(InterPro)
Lac2g0816 1030 Gene3D Ribonuclease Inhibitor 177 276 IPR032675 -
Lac2g0816 1030 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 753 962 - -
Lac2g0816 1030 SUPERFAMILY L domain-like 35 364 - -
Lac2g0816 1030 SUPERFAMILY Protein kinase-like (PK-like) 649 947 IPR011009 -
Lac2g0816 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0816 1030 Gene3D Phosphorylase Kinase; domain 1 642 752 - -
Lac2g0816 1030 FunFam Probable inactive receptor kinase RLK902 21 180 - -
Lac2g0816 1030 FunFam Leucine-rich receptor-like protein kinase family protein 181 276 - -
Lac2g0816 1030 Pfam Protein kinase domain 661 944 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0816 1030 Pfam Leucine Rich Repeat 546 566 IPR001611 GO:0005515(InterPro)
Lac2g0816 1030 Pfam Leucine Rich Repeat 523 544 IPR001611 GO:0005515(InterPro)
Lac2g0816 1030 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515(InterPro)
Lac2g0816 1030 Pfam Leucine Rich Repeat 450 472 IPR001611 GO:0005515(InterPro)
Lac2g0816 1030 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515(InterPro)
Lac2g0816 1030 Gene3D Ribonuclease Inhibitor 277 596 IPR032675 -
Lac2g0816 1030 FunFam Leucine-rich repeat receptor-like protein kinase TDR 277 592 - -
Lac2g0816 1030 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Lac2g0816 1030 SUPERFAMILY RNI-like 317 567 - -
Lac2g0816 1030 FunFam Receptor-like protein kinase HAIKU2 642 752 - -
Lac2g0816 1030 SMART serkin_6 659 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0816 1030 CDD STKc_IRAK 665 948 - -
Lac2g0816 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 949 IPR050647 -
Lac2g0816 1030 Gene3D Ribonuclease Inhibitor 21 176 IPR032675 -
Lac2g0816 1030 ProSiteProfiles Protein kinase domain profile. 659 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0816 Lac-Chr2:6461500 Lac6g1049 Lac-Chr6:9609861 2.80E-90 dispersed
Lac2g0816 Lac-Chr2:6461500 Lac2g0817 Lac-Chr2:6478746 5.30E-97 tandem
Lac12g0128 Lac-Chr12:1414456 Lac2g0816 Lac-Chr2:6461500 2.50E-168 transposed
Lac7g2895 Lac-Chr7:48050473 Lac2g0816 Lac-Chr2:6461500 1.70E-09 transposed
Lac8g3064 Lac-Chr8:47323426 Lac2g0816 Lac-Chr2:6461500 1.10E-22 transposed
Lac1g2728 Lac-Chr1:48470441 Lac2g0816 Lac-Chr2:6461500 5.20E-62 wgd
Lac2g0816 Lac-Chr2:6461500 Lac5g1860 Lac-Chr5:36849506 3.30E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85994 PF00069 Pkinase 5.20E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0816 - - - 0.0