Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0817 ATGGCCCTCCTTTTCTTCTTTCTTCTCTCTTTGATTTCTCCTGCCGTCGGAAATTCCCAGCCTGATTTTTTCACTCTCATGCGGAAGGCGGTGCTCGGGAGTTCTCTGCCGTCCGATTGGGATGGGAATTCGTTCTGTAATTTCACCGGCGTCGCCTGCAACGAGAAGGGGTTTGTGGTAAGGATTGATCTTTCCGGTCGGGCGGTTTCCGGGAGGTTTCCGCCGGATGTGTGTTCTTATTTTCCGGAGTTGAGAGTGCTGCGCCTTGCGAAGAGTGGCTTCCGTGGAACTTTCCCACGTGGGATAACGAATTGCTCTGTTTTGGAAGAACTGGACATGGCGGCTCTGTCTCTGACTGGGATGCTACCGGATTTCTCGCCGTTGAAGAGCCTGAGGATTCTCGACTTGTCGTACAACAACTTCACCGGCGAATTCCCGTTGTCGGTCTTCGGTTTGACGAATCTCGAGACGCTGAATTTCAACGAGGATAATAATTTCAATACGTGGCAGTTGCCGGAGAATATCTCCGGCTTGACGAAGCTGAAAACGATGGTGTTGACGACTTGTATGTTGGAAGGGCGAATTCCGACGACGATTGGGAACATGACGGCGCTCGTTGACCTGGAATTGAGCGGCAATTTCCTCGCCGGAAAAATCCCGAGAGAGATCGGGAGTCTGAAGAATTTGAGACAGCTGGAGCTTTATTACAATTCATTTGTCGGCGAAATTCCGGAGGAGCTCGGGAATTTAACAGAGCTCGTGGACTTGGACATGTCGGTCAACCACTTGACTGGAAGACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTCGAAGTCCTTCAGCTTTACAACAACTGCTTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACAACACTCACTATGTTATCTCTTTACGACAACTACATGACGGGACAAGTTCCAAGTAATTTGGGTCAGTCCTCGCCCATGGTCGTTCTCGACTTGTCGGAAAATAATTTCTCCGGTCCCTTACCGACGGATGTCTGCCAACAAGGTAAATTAATGTATTTTCTCGTTCTGGAAAATAAATTTTCCGGTGAAATCCCGCCGTCGTTAAGTAAATGCCAGTCGCTTTTACGCTTTCGAGTCAGTTCGAATTTTCTTCGAGGTCCGGTGCCGGCGGGGCTTTTGAGTCTTCCTCATGTTTCGATCATCGATTTCGGCAACAATAATTTGAGCGGCGAGATTCCGAATTCTTTTGTGAAAGCTCGGAATCTCTCGGAGTTGTTCGTGCAGGGCAATAAAATTTCCGGCGTGTTGCCGCCGGAGATTTCAAAAGCGACGAATTTGGTTAAGATTGATCTTAGCAACAATCTCTTGTCGGGTCCAATCCCTTCGGAAATCGGGAATCTCAAGAGGCTTAATCTGCTGCTTTTGCAAGGAAACCAGCTGAATTCTTCAATACCCACTTCGCTTTCTCAGCTGAAATCTCTCAATGTTCTTGATTTATCCGACAATCGGTTGACTGGTAACATCCCAGAAAGTCTCTGCGAATTGCTGCCGAATTCAATCAATTTCTCAGACAATCAGCTCTCTGGTCCAATTCCTCTGTCTCTGATCAAAGGTGGGTTAGTCGAAAGCTTCTCCGGCAACCCGGGACTGTGCGTTTCGGTGTACTTAGATTCTTCCGATCATAAATTCCCAATCTGTTCACAAAACTACAACAAAAAGCGACTGAATTCCATCTGGGCAATCGGAATATCGGCGTTCATAATCTTCATCGGAGCTGCTCTGTATCTAAAACGGCGATTCATCAGAGAAAAATCAGTAATGGAACAGGACGAGACACTGTCGTCGTCGTTCTTCTCGTACGACGTGAAAAGCTTCCACCGAATCAGCTTCGACCCACGAGAGGTAATCGAGTCGATGGTGGACAAGAACATCGTCGGGCACGGTGGCTCCGGCACGGTGTACAAAATAGAATTGAGCAGCGGCGAGATCGTGGCGGTGAAAAGGCTGTGGAGTCGGAAGGGGAAGGATACGACGTCGGATCAGGATCAGTTGTATTTGGACAAAGAGCTGAAAACAGAAGTGGAGACTTTGGGGAGTATAAGGCACAAAAATATAGTGAAATTGTATTGCTATTTCTCGAGCTTGGACTGCAGCCTTTTGGTTTATGAGTATATGCCAAATGGCAATTTATGGGACGCCTTGCACAAGGGTTGGGTTCATTTGGATTGGCCGACCAGGCACCAGATTGCGCTGGGTATAGCGCAGGGCTTGGCTTATCTTCATCATGATCTGTTGCCTTCTATTATCCATAGGGACATTAAGACCACTAATATTCTGCTGGATGTGAATTATCACCCTAAAGTTGCGGACTTTGGTATTGCTAAGGTTTTGCAAGCTAGAGCTGGGAAGGACTCCACCACCACCGTCATCGCCGGCACCTACGGCTATCTCGCCCCTGAGTATGCATATTCATCAAAAGCGACGACAAAGTGCGACGTATACAGCTTCGGGATCGTGCTAATGGAGCTGATAACGGGGAAGAAGCCGGTGGAGGCAGAGTTCGGGGAGAACAAGAACATAATCTATTGGGTTTCAAACAAAGTAGACACAAAGGAAGGAGCTATGGAAGTATTGGACAAAAGAGTTTCAGGGTCATTCAAGGACGAGATGATTCAAGTTCTAAGGATTGCAATTCGGTGTACGTACAAGAATCCAGCCCTTCGACCCACCATGAAGGAAGTGGTTCAGCTGTTGATTGAAGCTGACCCTTGCAAATTCCATTCTCATAACAAATTCTCCCCTAAAGAAACCACCACCAAATTCAAGAATAACCCATTTGAGCTATGA 2844 47.26 MALLFFFLLSLISPAVGNSQPDFFTLMRKAVLGSSLPSDWDGNSFCNFTGVACNEKGFVVRIDLSGRAVSGRFPPDVCSYFPELRVLRLAKSGFRGTFPRGITNCSVLEELDMAALSLTGMLPDFSPLKSLRILDLSYNNFTGEFPLSVFGLTNLETLNFNEDNNFNTWQLPENISGLTKLKTMVLTTCMLEGRIPTTIGNMTALVDLELSGNFLAGKIPREIGSLKNLRQLELYYNSFVGEIPEELGNLTELVDLDMSVNHLTGRLPESICRLPKLEVLQLYNNCLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQSSPMVVLDLSENNFSGPLPTDVCQQGKLMYFLVLENKFSGEIPPSLSKCQSLLRFRVSSNFLRGPVPAGLLSLPHVSIIDFGNNNLSGEIPNSFVKARNLSELFVQGNKISGVLPPEISKATNLVKIDLSNNLLSGPIPSEIGNLKRLNLLLLQGNQLNSSIPTSLSQLKSLNVLDLSDNRLTGNIPESLCELLPNSINFSDNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDHKFPICSQNYNKKRLNSIWAIGISAFIIFIGAALYLKRRFIREKSVMEQDETLSSSFFSYDVKSFHRISFDPREVIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQDQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWVHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARAGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIQVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFHSHNKFSPKETTTKFKNNPFEL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6478746 6482310 + Lag0037455.1 Lac2g0817 598081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0817 947 ProSiteProfiles Leucine-rich repeat profile. 492 514 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 SMART LRR_typ_2 128 152 IPR003591 -
Lac2g0817 947 SMART LRR_typ_2 490 514 IPR003591 -
Lac2g0817 947 SMART LRR_typ_2 274 298 IPR003591 -
Lac2g0817 947 SMART LRR_typ_2 226 250 IPR003591 -
Lac2g0817 947 Pfam Leucine Rich Repeat 253 274 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 420 441 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 228 250 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 444 466 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 Pfam Leucine Rich Repeat 492 514 IPR001611 GO:0005515(InterPro)
Lac2g0817 947 FunFam Receptor protein-tyrosine kinase CEPR1 274 559 - -
Lac2g0817 947 Gene3D Ribonuclease Inhibitor 166 272 IPR032675 -
Lac2g0817 947 Gene3D Phosphorylase Kinase; domain 1 622 723 - -
Lac2g0817 947 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 294 918 IPR051564 GO:0016020(PANTHER)
Lac2g0817 947 Gene3D Transferase(Phosphotransferase) domain 1 724 937 - -
Lac2g0817 947 SUPERFAMILY RNI-like 61 344 - -
Lac2g0817 947 FunFam leucine-rich repeat receptor-like protein kinase TDR 724 929 - -
Lac2g0817 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0817 947 Gene3D Ribonuclease Inhibitor 26 165 IPR032675 -
Lac2g0817 947 FunFam Leucine-rich repeat receptor-like protein kinase 168 270 - -
Lac2g0817 947 SUPERFAMILY Protein kinase-like (PK-like) 625 917 IPR011009 -
Lac2g0817 947 ProSiteProfiles Protein kinase domain profile. 638 931 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0817 947 SMART serkin_6 638 924 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0817 947 Gene3D Ribonuclease Inhibitor 285 559 IPR032675 -
Lac2g0817 947 FunFam receptor protein-tyrosine kinase CEPR1 621 723 - -
Lac2g0817 947 SUPERFAMILY RNI-like 243 534 - -
Lac2g0817 947 Pfam Protein kinase domain 641 915 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0817 947 ProSitePatterns Protein kinases ATP-binding region signature. 644 666 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0128 Lac-Chr12:1414456 Lac2g0817 Lac-Chr2:6478746 9.00E-86 dispersed
Lac2g0817 Lac-Chr2:6478746 Lac6g1049 Lac-Chr6:9609861 2.10E-185 dispersed
Lac2g0816 Lac-Chr2:6461500 Lac2g0817 Lac-Chr2:6478746 5.30E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85995 PF00069 Pkinase 2.20E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0817 - - - 0.0