Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0830 ATGGCGATCGCTGCAGAGAACCAACCCCAGGAGAAGATCACCACTACGGAGGCCTCTGCTGTCGAGAAGAGAAGATGGACGCTTAACGACTTTGACATTGGAAAACCTCTCGGGAGAGGGAAGTTCGGACATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCCCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCATCAGCTTCGTCGGGAAGTCGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAGCGAATTTATTTGGTACTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAATACTTCAGCGAGAGACGTGCTGCTACTTACGTTGCGTCATTGGCTAGGGCGCTCATATACTGTCATGGAAAACATGTAATTCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCAGATTTTGGATGGTCGGTGCACACATTTAACCGTAGGCGGACTATGTGTGGGACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATTTGGAGCCTTGGTGTCCTCTGCTATGAGTTTCTCTATGGGGTACCCCCATTTGAGGCTAAGGAACATTCTGACACATACAGGAGAATTGTGCAAGTTGATTTGAAGTTTCCTCCAAGGCCAATCATTTCTTCGACTGCAAAGGACCTTATCAGTCAGAGCCCTCCGGTGTATATAAGAGTTGATCAGCCTTGTTATAATAGCTATTGGTACAAAGCTTCAAAAATGATCTCCATTACTTGTAGCATCAGCGTCATCCGAGACTCTGAGAGGATTGCAATCGGTTCAAGGAGGAGGAAAATGTCGTGGCAACAGTACGTGGATGAGCAGTTGATGTGCGATATTGAAGGGAGCCGTCTCTCTGCCGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTAAGAGCTCCAGTTTTCCTCAGTTCAAGCCAGAAGAGTTAGCAGCCATTATGAACGATTTTGCTGAACCTGGATCACTTGCTCCAACTGGTTTGTTCCTCGGAGGCACCAAGTACATGGTTATTCAAGGTGAAACAGGTGCTGTCATACGAGGAAAAAAGGGTGCTGGCGGGATTACTATTAAGAAGACTAATCTGGCATTGATCATCGGTATCTATGGTGAGCCCTTGACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAG 1320 46.74 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQSPPVYIRVDQPCYNSYWYKASKMISITCSISVIRDSERIAIGSRRRKMSWQQYVDEQLMCDIEGSRLSAAAIIGQDGTVWAKSSSFPQFKPEELAAIMNDFAEPGSLAPTGLFLGGTKYMVIQGETGAVIRGKKGAGGITIKKTNLALIIGIYGEPLTPGQCNMIVERLGDYLIEQGL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6571454 6576427 + Lag0037468.1 Lac2g0830 598094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0830 439 SMART serkin_6 31 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 FunFam Profilin 309 439 - -
Lac2g0830 439 SUPERFAMILY Profilin (actin-binding protein) 310 438 IPR036140 -
Lac2g0830 439 Gene3D Transferase(Phosphotransferase) domain 1 114 263 - -
Lac2g0830 439 FunFam Aurora kinase A 23 114 - -
Lac2g0830 439 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 261 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Lac2g0830 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 392 407 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 360 374 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 335 348 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 425 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 412 425 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 379 388 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 309 322 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 CDD STKc_Aurora 30 261 - -
Lac2g0830 439 SMART prof_2 309 439 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 Pfam Protein kinase domain 33 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 CDD PROF 310 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 Gene3D Dynein light chain 2a, cytoplasmic 307 439 - -
Lac2g0830 439 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Lac2g0830 439 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Lac2g0830 439 SUPERFAMILY Protein kinase-like (PK-like) 19 261 IPR011009 -
Lac2g0830 439 PRINTS Profilin signature 329 338 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 372 386 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 348 368 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 311 320 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 421 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 FunFam Serine/threonine-protein kinase ark1 23 269 - -
Lac2g0830 439 Pfam Profilin 309 439 IPR048278 GO:0003779(InterPro)
Lac2g0830 439 ProSiteProfiles Protein kinase domain profile. 31 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0830 Lac-Chr2:6571454 Lac7g0307 Lac-Chr7:2362919 8.00E-95 dispersed
Lac2g1838 Lac-Chr2:18401703 Lac2g0830 Lac-Chr2:6571454 3.30E-17 dispersed
Lac9g1729 Lac-Chr9:36936042 Lac2g0830 Lac-Chr2:6571454 7.00E-42 transposed
Lac2g0830 Lac-Chr2:6571454 Lac4g2933 Lac-Chr4:47677649 3.30E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85996 PF00069 Pkinase 2.70E-65 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0830 K08850 - csv:101219866 527.324