Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0830 ATGGCGATCGCTGCAGAGAACCAACCCCAGGAGAAGATCACCACTACGGAGGCCTCTGCTGTCGAGAAGAGAAGATGGACGCTTAACGACTTTGACATTGGAAAACCTCTCGGGAGAGGGAAGTTCGGACATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCCCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCATCAGCTTCGTCGGGAAGTCGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAGCGAATTTATTTGGTACTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAATACTTCAGCGAGAGACGTGCTGCTACTTACGTTGCGTCATTGGCTAGGGCGCTCATATACTGTCATGGAAAACATGTAATTCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCAGATTTTGGATGGTCGGTGCACACATTTAACCGTAGGCGGACTATGTGTGGGACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATTTGGAGCCTTGGTGTCCTCTGCTATGAGTTTCTCTATGGGGTACCCCCATTTGAGGCTAAGGAACATTCTGACACATACAGGAGAATTGTGCAAGTTGATTTGAAGTTTCCTCCAAGGCCAATCATTTCTTCGACTGCAAAGGACCTTATCAGTCAGAGCCCTCCGGTGTATATAAGAGTTGATCAGCCTTGTTATAATAGCTATTGGTACAAAGCTTCAAAAATGATCTCCATTACTTGTAGCATCAGCGTCATCCGAGACTCTGAGAGGATTGCAATCGGTTCAAGGAGGAGGAAAATGTCGTGGCAACAGTACGTGGATGAGCAGTTGATGTGCGATATTGAAGGGAGCCGTCTCTCTGCCGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTAAGAGCTCCAGTTTTCCTCAGTTCAAGCCAGAAGAGTTAGCAGCCATTATGAACGATTTTGCTGAACCTGGATCACTTGCTCCAACTGGTTTGTTCCTCGGAGGCACCAAGTACATGGTTATTCAAGGTGAAACAGGTGCTGTCATACGAGGAAAAAAGGGTGCTGGCGGGATTACTATTAAGAAGACTAATCTGGCATTGATCATCGGTATCTATGGTGAGCCCTTGACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAG 1320 46.74 MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQSPPVYIRVDQPCYNSYWYKASKMISITCSISVIRDSERIAIGSRRRKMSWQQYVDEQLMCDIEGSRLSAAAIIGQDGTVWAKSSSFPQFKPEELAAIMNDFAEPGSLAPTGLFLGGTKYMVIQGETGAVIRGKKGAGGITIKKTNLALIIGIYGEPLTPGQCNMIVERLGDYLIEQGL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6571454 6576427 + Lag0037468.1 Lac2g0830 598094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0830 439 SMART serkin_6 31 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 FunFam Profilin 309 439 - -
Lac2g0830 439 SUPERFAMILY Profilin (actin-binding protein) 310 438 IPR036140 -
Lac2g0830 439 Gene3D Transferase(Phosphotransferase) domain 1 114 263 - -
Lac2g0830 439 FunFam Aurora kinase A 23 114 - -
Lac2g0830 439 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 10 261 IPR030616 GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER)
Lac2g0830 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 392 407 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 360 374 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 335 348 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 425 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 412 425 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 379 388 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Plant profilin signature 309 322 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 CDD STKc_Aurora 30 261 - -
Lac2g0830 439 SMART prof_2 309 439 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 Pfam Protein kinase domain 33 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0830 439 CDD PROF 310 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 Gene3D Dynein light chain 2a, cytoplasmic 307 439 - -
Lac2g0830 439 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Lac2g0830 439 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524(InterPro)
Lac2g0830 439 SUPERFAMILY Protein kinase-like (PK-like) 19 261 IPR011009 -
Lac2g0830 439 PRINTS Profilin signature 329 338 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 372 386 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 408 421 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 348 368 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 311 320 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 PRINTS Profilin signature 421 438 IPR005455 GO:0003779(InterPro)
Lac2g0830 439 FunFam Serine/threonine-protein kinase ark1 23 269 - -
Lac2g0830 439 Pfam Profilin 309 439 IPR048278 GO:0003779(InterPro)
Lac2g0830 439 ProSiteProfiles Protein kinase domain profile. 31 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0830 K08850 - - csv:101219866 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0830 Lac-Chr2:6571454 Lac7g0307 Lac-Chr7:2362919 8.00E-95 dispersed
Lac2g1838 Lac-Chr2:18401703 Lac2g0830 Lac-Chr2:6571454 3.30E-17 dispersed
Lac9g1729 Lac-Chr9:36936042 Lac2g0830 Lac-Chr2:6571454 7.00E-42 transposed
Lac2g0830 Lac-Chr2:6571454 Lac4g2933 Lac-Chr4:47677649 3.30E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 9.6e-214 740.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT2G37620 95.5 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 3.1e-212 734.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT2G37620 93.1 1.5e-203 706.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-199 693.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT2G37620 86.7 5.1e-199 691.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT2G37620 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT2G37620 95.0 2.0e-131 466.5
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-213 739.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-210 729.6
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G59370 94.4 4.9e-210 727.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G59370 94.2 4.8e-205 711.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-198 689.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G59370 87.2 3.3e-198 688.3
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G59370 87.5 2.0e-155 546.2
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT5G59370 94.2 1.3e-130 463.8
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.8e-211 730.7
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G46520 94.7 2.2e-210 728.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G46520 94.4 2.1e-205 712.2
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G46520 96.1 5.6e-198 687.6
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G46520 86.9 9.6e-198 686.8
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G46520 87.9 9.1e-156 547.4
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G46520 94.6 4.6e-131 465.3
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 6.6e-215 743.8
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 4.0e-212 734.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G12110 93.4 2.4e-204 708.8
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G12110 96.3 1.0e-199 693.3
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G12110 87.2 1.8e-199 692.6
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G12110 87.2 7.0e-156 547.7
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G12110 94.2 2.3e-130 463.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G18780 93.1 7.1e-209 723.8
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.7e-207 719.2
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.3e-207 718.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G18780 89.7 7.9e-200 693.7
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G18780 92.4 2.9e-194 675.2
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G18780 82.2 7.9e-192 667.2
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G18780 83.8 4.0e-151 531.9
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT3G18780 90.8 2.3e-127 453.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT1G49240 93.4 2.4e-209 725.3
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 6.0e-208 720.7
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 7.9e-208 720.3
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT1G49240 89.9 2.7e-200 695.3
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT1G49240 92.1 6.5e-194 674.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT1G49240 82.5 2.7e-192 668.7
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT1G49240 84.1 1.4e-151 533.5
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT1G49240 91.3 8.0e-128 454.5
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.3e-214 741.1
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 8.1e-213 736.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G09810 92.8 4.5e-203 704.5
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G09810 96.1 5.1e-199 691.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G09810 86.4 4.3e-198 688.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G09810 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT5G09810 97.5 2.9e-133 472.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.3e-56 216.5
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 1.7e-56 216.1
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.4e-56 214.2
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT2G19760 72.5 2.3e-53 205.7
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 5.1e-53 204.5
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 2.2e-56 215.7
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 2.9e-56 215.3
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 2.4e-55 212.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 8.6e-53 203.8
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29350 71.8 1.9e-52 202.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.2e-64 242.3
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 3.1e-58 221.9
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 4.5e-57 218.0
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29340 71.6 2.6e-52 202.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 7.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85996 PF00069 Pkinase 2.70E-65 CL0016 Lac PK