Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0830 | ATGGCGATCGCTGCAGAGAACCAACCCCAGGAGAAGATCACCACTACGGAGGCCTCTGCTGTCGAGAAGAGAAGATGGACGCTTAACGACTTTGACATTGGAAAACCTCTCGGGAGAGGGAAGTTCGGACATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCCCTGAAAGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCATCAGCTTCGTCGGGAAGTCGAAATACAGAGTCATCTTAGACACTCTAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAGCGAATTTATTTGGTACTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAATACTTCAGCGAGAGACGTGCTGCTACTTACGTTGCGTCATTGGCTAGGGCGCTCATATACTGTCATGGAAAACATGTAATTCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCAGATTTTGGATGGTCGGTGCACACATTTAACCGTAGGCGGACTATGTGTGGGACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATTTGGAGCCTTGGTGTCCTCTGCTATGAGTTTCTCTATGGGGTACCCCCATTTGAGGCTAAGGAACATTCTGACACATACAGGAGAATTGTGCAAGTTGATTTGAAGTTTCCTCCAAGGCCAATCATTTCTTCGACTGCAAAGGACCTTATCAGTCAGAGCCCTCCGGTGTATATAAGAGTTGATCAGCCTTGTTATAATAGCTATTGGTACAAAGCTTCAAAAATGATCTCCATTACTTGTAGCATCAGCGTCATCCGAGACTCTGAGAGGATTGCAATCGGTTCAAGGAGGAGGAAAATGTCGTGGCAACAGTACGTGGATGAGCAGTTGATGTGCGATATTGAAGGGAGCCGTCTCTCTGCCGCTGCGATCATTGGCCAAGACGGCACTGTTTGGGCTAAGAGCTCCAGTTTTCCTCAGTTCAAGCCAGAAGAGTTAGCAGCCATTATGAACGATTTTGCTGAACCTGGATCACTTGCTCCAACTGGTTTGTTCCTCGGAGGCACCAAGTACATGGTTATTCAAGGTGAAACAGGTGCTGTCATACGAGGAAAAAAGGGTGCTGGCGGGATTACTATTAAGAAGACTAATCTGGCATTGATCATCGGTATCTATGGTGAGCCCTTGACTCCTGGTCAGTGCAACATGATCGTCGAAAGGCTAGGCGATTACCTGATCGAGCAGGGACTGTAG | 1320 | 46.74 | MAIAAENQPQEKITTTEASAVEKRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQSPPVYIRVDQPCYNSYWYKASKMISITCSISVIRDSERIAIGSRRRKMSWQQYVDEQLMCDIEGSRLSAAAIIGQDGTVWAKSSSFPQFKPEELAAIMNDFAEPGSLAPTGLFLGGTKYMVIQGETGAVIRGKKGAGGITIKKTNLALIIGIYGEPLTPGQCNMIVERLGDYLIEQGL | 439 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6571454 | 6576427 | + | Lag0037468.1 | Lac2g0830 | 598094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0830 | 439 | SMART | serkin_6 | 31 | 312 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0830 | 439 | FunFam | Profilin | 309 | 439 | - | - | |
Lac2g0830 | 439 | SUPERFAMILY | Profilin (actin-binding protein) | 310 | 438 | IPR036140 | - | |
Lac2g0830 | 439 | Gene3D | Transferase(Phosphotransferase) domain 1 | 114 | 263 | - | - | |
Lac2g0830 | 439 | FunFam | Aurora kinase A | 23 | 114 | - | - | |
Lac2g0830 | 439 | PANTHER | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | 10 | 261 | IPR030616 | GO:0004672(InterPro)|GO:0005876(PANTHER)|GO:0007052(PANTHER)|GO:0031616(PANTHER)|GO:0032133(PANTHER)|GO:0032465(PANTHER)|GO:0035174(PANTHER)|GO:0051233(PANTHER) | |
Lac2g0830 | 439 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 392 | 407 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 360 | 374 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 335 | 348 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 425 | 438 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 412 | 425 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 379 | 388 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Plant profilin signature | 309 | 322 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | CDD | STKc_Aurora | 30 | 261 | - | - | |
Lac2g0830 | 439 | SMART | prof_2 | 309 | 439 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | Pfam | Protein kinase domain | 33 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac2g0830 | 439 | CDD | PROF | 310 | 438 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | Gene3D | Dynein light chain 2a, cytoplasmic | 307 | 439 | - | - | |
Lac2g0830 | 439 | Gene3D | Phosphorylase Kinase; domain 1 | 18 | 113 | - | - | |
Lac2g0830 | 439 | ProSitePatterns | Protein kinases ATP-binding region signature. | 37 | 60 | IPR017441 | GO:0005524(InterPro) | |
Lac2g0830 | 439 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 261 | IPR011009 | - | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 329 | 338 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 372 | 386 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 408 | 421 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 348 | 368 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 311 | 320 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | PRINTS | Profilin signature | 421 | 438 | IPR005455 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | FunFam | Serine/threonine-protein kinase ark1 | 23 | 269 | - | - | |
Lac2g0830 | 439 | Pfam | Profilin | 309 | 439 | IPR048278 | GO:0003779(InterPro) | |
Lac2g0830 | 439 | ProSiteProfiles | Protein kinase domain profile. | 31 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0830 | Lac-Chr2:6571454 | Lac7g0307 | Lac-Chr7:2362919 | 8.00E-95 | dispersed | |
Lac2g1838 | Lac-Chr2:18401703 | Lac2g0830 | Lac-Chr2:6571454 | 3.30E-17 | dispersed | |
Lac9g1729 | Lac-Chr9:36936042 | Lac2g0830 | Lac-Chr2:6571454 | 7.00E-42 | transposed | |
Lac2g0830 | Lac-Chr2:6571454 | Lac4g2933 | Lac-Chr4:47677649 | 3.30E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85996 | PF00069 | Pkinase | 2.70E-65 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0830 | K08850 | - | csv:101219866 | 527.324 |