Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0841 ATGATGGCTGTGACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGCAAGTATGTTAGGTACACACCTGAGCAAGTTGAAGCCCTTGAGAGGCTCTATTATGAATGCCCAAAACCCAGTTCTATGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCTAACATCGAACCTAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAGCAGAGGAAGGAGGCATCACGCCTGCAAACTGTGAACAGGAAGCTGACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAGGTCTCACAGCTTGTGTACGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCCTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCAGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGCGCCGTTGACGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTTTACATGCAGCTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAAGATGGTAGTCTTGTGGTATGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCAGTACAAAACTTTGTTAGAGCAGAGATGCTACCAAGTGGATATCTGATAAGACCTTGTGAAGGTGGCGGATCAATAATCCATATCGTTGATCACATGGACTTAGAACCTTGGAGCGTGCCAGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACGATGGCAGCATTACGCTTGTTGAGACAGATTTCACAAGAAGTTTCTCAACCAAATGTTACGGGTTGGGGAAGAAGACCTGCTGCTCTTCGTGCTCTTAGTCAGAAATTGAGCAGAGGTTTCAACGAAGCAGTAAATGGTTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGACGATGTTACACTTCTAGTAAACATGTCTCATGGAAAGACAATGATGGGTGCAAATATTTCATATTCTGATGGCTTTCCATCTATGAGCAACGCAGTGCTTTGTGCCAAAGCATCAATGTTATTACAGAATGTCACTCCAGCAATGCTCATTAGGTTCTTGAGAGAACACCGGTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCAGCAATTAAGACTGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGACAGGTCATTCTTCCCTTGGCACAAACAGTTGAGCATGAAGAGTTTATGGAAGTTATAAAATTTGAAAACGTGGGCCACTATAGGGATGACATGCTCATGCCTAGTGACATCTTCCTCCTCCAACTTTGCAATGGTGTGGATGAGAATGCAGTTGGTACTTCTGCTGAACTCATCTTTGCTCCAATTGACGCCTCTTTCTCTGACGATGCACCTATTCTACCATCTGGCTTCCGCATCATTCCTCTTGACTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCAGCTCTTGATGTCGGACCCGCAGGGAATAGAGCCTCTGGGGATTTTGCTGGTCAATCAGGAAAATCAAAATCTGTGATGACAATTGCATTCCAATTTGTGTTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCGCGCCAGTATGTTCGAAGCATTATAGCATCTGTTCAGAGGGTGGCATTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATGCTAACCTTCAGACGCCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTGTCAAAGCTATAGGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTACTCAAATCACTTTGGCATCACTCGGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACATTTGCAAATCAATCTGGACTTGACATGCTTGAGACAACCTTGGTGGCTCTCCAAGACATTACTCTGGAGAAGATTTTTGATGACAATGGAAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTATGAGAAAGCTGTGGCATGGAAGAGTACCATTCACTTGAAGAATGCTGATCTTGATTTGTCCTTTCAATTCTCATGCTTTGCCTTCTCCATTCCTTTTCAATTTTGGAACAAGAAGTCCCTTTCAGCTCAGTTTCTTCCCATTCTAAGGCTCTGTCAAGACAAGATAATGTGGCTGAGGAGAAGTTTGAAAGCAGCACTCAGCCAATCTGCCAATTGA 2658 45.82 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTGWGRRPAALRALSQKLSRGFNEAVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSDGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQVILPLAQTVEHEEFMEVIKFENVGHYRDDMLMPSDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDFAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWICQSYRCYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKSTIHLKNADLDLSFQFSCFAFSIPFQFWNKKSLSAQFLPILRLCQDKIMWLRRSLKAALSQSAN 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6647645 6655606 - Lag0037479.1 Lac2g0841 598105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0841 885 Gene3D - 14 88 - -
Lac2g0841 885 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677(InterPro)
Lac2g0841 885 CDD START_ArGLABRA2_like 160 375 - -
Lac2g0841 885 Pfam Homeodomain 22 80 IPR001356 GO:0003677(InterPro)
Lac2g0841 885 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 837 IPR044830 GO:0003700(InterPro)
Lac2g0841 885 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
Lac2g0841 885 SUPERFAMILY Bet v1-like 165 375 - -
Lac2g0841 885 SMART HOX_1 19 85 IPR001356 GO:0003677(InterPro)
Lac2g0841 885 FunFam homeobox-leucine zipper protein ATHB-15 201 382 - -
Lac2g0841 885 Gene3D - 200 376 IPR023393 -
Lac2g0841 885 ProSiteProfiles START domain profile. 156 370 IPR002913 GO:0008289(InterPro)
Lac2g0841 885 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
Lac2g0841 885 Coils Coil 91 118 - -
Lac2g0841 885 FunFam Homeobox-leucine zipper protein REVOLUTA 22 77 - -
Lac2g0841 885 CDD bZIP 74 113 - -
Lac2g0841 885 Pfam START domain 166 374 IPR002913 GO:0008289(InterPro)
Lac2g0841 885 CDD homeodomain 22 82 IPR001356 GO:0003677(InterPro)
Lac2g0841 885 Pfam MEKHLA domain 701 821 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0841 Lac-Chr2:6647645 Lac9g2585 Lac-Chr9:44396202 5.80E-302 dispersed
Lac2g0841 Lac-Chr2:6647645 Lac4g2918 Lac-Chr4:47541330 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23476 PF01852 START 4.20E-54 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0841 K09338 - csv:101218438 1618.98