Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0847 ATGTCACCAACTGATCAAGAGCCTCGAGTTTCCGAAGGATCCGCGGACGGCAGCTCCAATTCCAATTCCAATACGCCCAACAAGCGAGTCCGAGATTCCAGCAAGCACCCAATGTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGCTCGGTACCTTCCCCACGCCCGAGATGGCCGCTCGAGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTACTTCCGCCATTCTCAACTTCCCCGAACTCGCCCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCTAATTTCCACTACTCTCCTTCCTCCAATTCATTGTCCACGCCCATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACAGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTCATGGATTCCACCGAGGGCTGGGTTTATCCGCCGCCCTGGTTACGAACCATGGAGGATTGCTGCTACAACAGCCACGACATTATTGACGACTTGGGAATTGGGGATACTAATTTCTTGTGGTAA 657 57.99 MSPTDQEPRVSEGSADGSSNSNSNTPNKRVRDSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFHYSPSSNSLSTPMDLSPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCCYNSHDIIDDLGIGDTNFLW 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6702233 6702889 - Lag0037485.1 Lac2g0847 598111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0847 218 MobiDBLite consensus disorder prediction 130 150 - -
Lac2g0847 218 Pfam AP2 domain 38 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677(InterPro)
Lac2g0847 218 MobiDBLite consensus disorder prediction 1 37 - -
Lac2g0847 218 CDD AP2 39 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 MobiDBLite consensus disorder prediction 130 149 - -
Lac2g0847 218 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 179 IPR051032 -
Lac2g0847 218 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0847 218 MobiDBLite consensus disorder prediction 1 28 - -
Lac2g0847 218 FunFam Ethylene-responsive transcription factor 2 37 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1100 Lac-Chr12:13768080 Lac2g0847 Lac-Chr2:6702233 5.60E-33 dispersed
Lac2g0847 Lac-Chr2:6702233 Lac3g0945 Lac-Chr3:7626221 2.80E-48 dispersed
Lac2g0847 Lac-Chr2:6702233 Lac4g2907 Lac-Chr4:47475878 3.50E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23478 PF00847 AP2 1.10E-13 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0847 K09286 - csv:101217333 281.182