Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0847 | ATGTCACCAACTGATCAAGAGCCTCGAGTTTCCGAAGGATCCGCGGACGGCAGCTCCAATTCCAATTCCAATACGCCCAACAAGCGAGTCCGAGATTCCAGCAAGCACCCAATGTACCGCGGCGTTCGAATGCGCGCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGCTCGGTACCTTCCCCACGCCCGAGATGGCCGCTCGAGCCCACGACGTCGCCGCCTTGTCCATCAAAGGTACTTCCGCCATTCTCAACTTCCCCGAACTCGCCCACTCCCTTCCCCGCCCCGTCTCCTTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCTAATTTCCACTACTCTCCTTCCTCCAATTCATTGTCCACGCCCATGGATTTATCCCCCTCCTCCGCCGCCGACGACTCCGACGAGCTCACAGAGATCGTCAAGCTGCCCACCCTCGGCACCAACTACGATGATCACTTCATCGCCAATAACGAGTTCGTGCTCATGGATTCCACCGAGGGCTGGGTTTATCCGCCGCCCTGGTTACGAACCATGGAGGATTGCTGCTACAACAGCCACGACATTATTGACGACTTGGGAATTGGGGATACTAATTTCTTGTGGTAA | 657 | 57.99 | MSPTDQEPRVSEGSADGSSNSNSNTPNKRVRDSSKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPELAHSLPRPVSFAPRDVQAAAAKAAHMDPNFHYSPSSNSLSTPMDLSPSSAADDSDELTEIVKLPTLGTNYDDHFIANNEFVLMDSTEGWVYPPPWLRTMEDCCYNSHDIIDDLGIGDTNFLW | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6702233 | 6702889 | - | Lag0037485.1 | Lac2g0847 | 598111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0847 | 218 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Lac2g0847 | 218 | Pfam | AP2 domain | 38 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | ProSiteProfiles | AP2/ERF domain profile. | 38 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | Gene3D | AP2/ERF domain | 38 | 96 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | SUPERFAMILY | DNA-binding domain | 38 | 96 | IPR016177 | GO:0003677(InterPro) | |
Lac2g0847 | 218 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Lac2g0847 | 218 | CDD | AP2 | 39 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | MobiDBLite | consensus disorder prediction | 130 | 149 | - | - | |
Lac2g0847 | 218 | SMART | rav1_2 | 38 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 21 | 179 | IPR051032 | - | |
Lac2g0847 | 218 | PRINTS | Ethylene responsive element binding protein signature | 61 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | PRINTS | Ethylene responsive element binding protein signature | 39 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0847 | 218 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lac2g0847 | 218 | FunFam | Ethylene-responsive transcription factor 2 | 37 | 96 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g1100 | Lac-Chr12:13768080 | Lac2g0847 | Lac-Chr2:6702233 | 5.60E-33 | dispersed | |
Lac2g0847 | Lac-Chr2:6702233 | Lac3g0945 | Lac-Chr3:7626221 | 2.80E-48 | dispersed | |
Lac2g0847 | Lac-Chr2:6702233 | Lac4g2907 | Lac-Chr4:47475878 | 3.50E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23478 | PF00847 | AP2 | 1.10E-13 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0847 | K09286 | - | csv:101217333 | 281.182 |