Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g0878 | ATGGCAGCTGCCATGGATTTCTACAGTGAAGGAACTCAAACTGACCACTTCGGTGGAGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCCTCTCTCTCTACAAATTTCCTTTCTTCTTCTTCTTCACCAACACCTACTCTTCCTTCTTCCTTCAACAGCCACCTCAACTTCCCTCAGTCAGCTCTTCAACAGTCCACTTTGTACTCAAATGGCTGCTCCACTTCGATGAACCCAGGATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTTACAATTGGACCCCATCAATTATCTTCAACTCAACTCCTCCATTCCCAGCCTCAGATCAATCTTCTTCAGAACCAAACCCCTGTAGCTTTTGCTTGGGGGCAACAGAACCATCAAACAAATCAACCATCACTGTGCTATGAGCAACAAACGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGCTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTTAGGCAACGGCATTGGGGGAAATGGGTGGCCGAGATCCGACTACCGAGGAACCGAACTCGACTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTCAATTTCCCCCACCTTAAGCACCAAGGCTCCTGCATTGAAGGCGAATTCGGCGAGTTTAGGCCTCTACATTCCTCAGTTGATGCAAAACTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCTAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCACGGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTAGCTGTGACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCGGATCTTACCTTCCCCGACTTCACAGAGTTGTCATGGGATCAGCATCAAGCTTGGGAGAATTCAGTGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA | 1074 | 48.6 | MAAAMDFYSEGTQTDHFGGELMEAIVPFIKVASSSASSSLSTNFLSSSSSPTPTLPSSFNSHLNFPQSALQQSTLYSNGCSTSMNPGFSDGFSTQNLIGFEQPFTIGPHQLSSTQLLHSQPQINLLQNQTPVAFAWGQQNHQTNQPSLCYEQQTPSFLSPKPIPMKQVASSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCIEGEFGEFRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSTAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELSWDQHQAWENSVLEKYPSEIDWASILP | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 6927629 | 6928702 | + | Lag0037516.1 | Lac2g0878 | 598142 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g0878 | 357 | Gene3D | AP2/ERF domain | 177 | 235 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | PRINTS | Ethylene responsive element binding protein signature | 178 | 189 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | PRINTS | Ethylene responsive element binding protein signature | 200 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | FunFam | Ethylene-responsive transcription factor 2 | 176 | 235 | - | - | |
Lac2g0878 | 357 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 15 | 355 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Lac2g0878 | 357 | SUPERFAMILY | DNA-binding domain | 177 | 235 | IPR016177 | GO:0003677(InterPro) | |
Lac2g0878 | 357 | CDD | AP2 | 176 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | SMART | rav1_2 | 177 | 240 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | Pfam | AP2 domain | 177 | 226 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac2g0878 | 357 | ProSiteProfiles | AP2/ERF domain profile. | 177 | 234 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0700 | Lac-Chr12:7255941 | Lac2g0878 | Lac-Chr2:6927629 | 3.80E-27 | dispersed | |
Lac1g2842 | Lac-Chr1:49454152 | Lac2g0878 | Lac-Chr2:6927629 | 8.90E-65 | dispersed | |
Lac2g0878 | Lac-Chr2:6927629 | Lac4g1501 | Lac-Chr4:33699977 | 1.00E-44 | dispersed | |
Lac2g0878 | Lac-Chr2:6927629 | Lac6g0878 | Lac-Chr6:7713336 | 2.20E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23479 | PF00847 | AP2 | 2.70E-15 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g0878 | K09286 | - | csv:101214560 | 576.244 |