Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0878 ATGGCAGCTGCCATGGATTTCTACAGTGAAGGAACTCAAACTGACCACTTCGGTGGAGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCCTCTGCTTCTTCCTCTCTCTCTACAAATTTCCTTTCTTCTTCTTCTTCACCAACACCTACTCTTCCTTCTTCCTTCAACAGCCACCTCAACTTCCCTCAGTCAGCTCTTCAACAGTCCACTTTGTACTCAAATGGCTGCTCCACTTCGATGAACCCAGGATTTTCAGATGGGTTCTCGACCCAAAACCTCATTGGTTTCGAACAGCCATTTACAATTGGACCCCATCAATTATCTTCAACTCAACTCCTCCATTCCCAGCCTCAGATCAATCTTCTTCAGAACCAAACCCCTGTAGCTTTTGCTTGGGGGCAACAGAACCATCAAACAAATCAACCATCACTGTGCTATGAGCAACAAACGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAAGTGGCTTCATCTTCAAAACCCACCAAGCTTTACAGAGGGGTTAGGCAACGGCATTGGGGGAAATGGGTGGCCGAGATCCGACTACCGAGGAACCGAACTCGACTCTGGCTTGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTCAATTTCCCCCACCTTAAGCACCAAGGCTCCTGCATTGAAGGCGAATTCGGCGAGTTTAGGCCTCTACATTCCTCAGTTGATGCAAAACTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCTAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCACGGCGGCTGTGAAGGTGGAGAACTCCTCGTCGCTAGCTGTGACAGAGAGCGACGGGTCTGCAGCGTCTTCACCTTTATCGGATCTTACCTTCCCCGACTTCACAGAGTTGTCATGGGATCAGCATCAAGCTTGGGAGAATTCAGTGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA 1074 48.6 MAAAMDFYSEGTQTDHFGGELMEAIVPFIKVASSSASSSLSTNFLSSSSSPTPTLPSSFNSHLNFPQSALQQSTLYSNGCSTSMNPGFSDGFSTQNLIGFEQPFTIGPHQLSSTQLLHSQPQINLLQNQTPVAFAWGQQNHQTNQPSLCYEQQTPSFLSPKPIPMKQVASSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSCIEGEFGEFRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSTAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELSWDQHQAWENSVLEKYPSEIDWASILP 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6927629 6928702 + Lag0037516.1 Lac2g0878 598142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0878 357 Gene3D AP2/ERF domain 177 235 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 PRINTS Ethylene responsive element binding protein signature 178 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 PRINTS Ethylene responsive element binding protein signature 200 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 FunFam Ethylene-responsive transcription factor 2 176 235 - -
Lac2g0878 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 355 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac2g0878 357 SUPERFAMILY DNA-binding domain 177 235 IPR016177 GO:0003677(InterPro)
Lac2g0878 357 CDD AP2 176 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 SMART rav1_2 177 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 Pfam AP2 domain 177 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac2g0878 357 ProSiteProfiles AP2/ERF domain profile. 177 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0700 Lac-Chr12:7255941 Lac2g0878 Lac-Chr2:6927629 3.80E-27 dispersed
Lac1g2842 Lac-Chr1:49454152 Lac2g0878 Lac-Chr2:6927629 8.90E-65 dispersed
Lac2g0878 Lac-Chr2:6927629 Lac4g1501 Lac-Chr4:33699977 1.00E-44 dispersed
Lac2g0878 Lac-Chr2:6927629 Lac6g0878 Lac-Chr6:7713336 2.20E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23479 PF00847 AP2 2.70E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0878 K09286 - csv:101214560 576.244