Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac2g0939 | ATGGGGTTGAACAGTAGAGCTGAAGATGAGGCAGAATCGCAGGAAGAATGTTTTCATGTATTGGCTGTGGATGATAATCTCATTGACAGAAAGCTGCTCGAGAGGCTTCTCAAAAGTTCTTCCTATCATGTGACCTGCGTAGAATCAGGAGACAAAGCTTTGAAATATTTGGGAGTGTACGATGAGACGTCATCGGAGAAGAGCAGCCATTGTTATGAAGCTGCTAATTACAGTTCTTCTTCATCGTCACAAGAAAGATTGAAAGTCAACTTAATCATGACAGACTTTTCCATGCCTGGAATGAGCGGCTATGATTTACTCAAACGTCTTAAGAAATCACGTTGGAAAGACGTACCAGTAATAGTGATGTCATCTGAAAACGTACCTTCGAGAGTCAACATGTGCTTGGAAGGAGGTGCTGAAGAGTTCCTTTTGAAGCCTCTTCAACTATCCGATTTGAACAAAATTGAACCTCATCTTCTCAAATCATCTCATCGAGAACTCGCAGACATTGCCCAAAATTTCAACGTAAACATCGACAACAGTAACAATACTATTGCCAAGAGATCGAAGCCCACAAAAAACGACGGTTGTATTACTTTGTGA | 606 | 41.09 | MGLNSRAEDEAESQEECFHVLAVDDNLIDRKLLERLLKSSSYHVTCVESGDKALKYLGVYDETSSEKSSHCYEAANYSSSSSSQERLKVNLIMTDFSMPGMSGYDLLKRLKKSRWKDVPVIVMSSENVPSRVNMCLEGGAEEFLLKPLQLSDLNKIEPHLLKSSHRELADIAQNFNVNIDNSNNTIAKRSKPTKNDGCITL | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 7392125 | 7395856 | + | Lag0037577.1 | Lac2g0939 | 598203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac2g0939 | 201 | Pfam | Response regulator receiver domain | 71 | 155 | IPR001789 | GO:0000160(InterPro) | |
| Lac2g0939 | 201 | ProSiteProfiles | Response regulatory domain profile. | 19 | 161 | IPR001789 | GO:0000160(InterPro) | |
| Lac2g0939 | 201 | Gene3D | - | 19 | 192 | - | - | |
| Lac2g0939 | 201 | MobiDBLite | consensus disorder prediction | 182 | 201 | - | - | |
| Lac2g0939 | 201 | SMART | REC_2 | 18 | 157 | IPR001789 | GO:0000160(InterPro) | |
| Lac2g0939 | 201 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 12 | 181 | IPR045279 | GO:0009736(InterPro) | |
| Lac2g0939 | 201 | SUPERFAMILY | CheY-like | 19 | 165 | IPR011006 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0939 | Lac-Chr2:7392125 | Lac8g2104 | Lac-Chr8:39471731 | 1.70E-44 | dispersed | |
| Lac2g0939 | Lac-Chr2:7392125 | Lac8g1837 | Lac-Chr8:36649279 | 2.70E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23482 | PF00072 | Response_reg | 5.60E-19 | CL0304 | Lac | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac2g0939 | K14492 | - | vvi:100259216 | 217.624 |