Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0953 ATGTCGTCCCACCTCTTCTTCACTCTTCTCTCAATCCTCTTCGTCGTCTCTTCTTCTTCTTCTCTCTGTCCCATAGACTTCAGCTACGTTCAAACCCTCCCGTGGGACACCGCCCCCTGCCGCCGCCCAAACGCCGCCGTTGGCCACTGCTGTCAGACCCTTCTCAGCCTCTTCGGCATCGGCTTAGCCCAACACCTCAAAGAAACTTCCCTCTTCGACCTTACGAATTCCACTTCCTCTTCCTCCTGCCTCTCCTCTTTCCAATCCAAGCTCTCTTCAATGGCGCTCCCTTCTTCCCTCGTCCCCAATTGCTTCCAAAACCCATCTCAATTCGTCGCCAATTCCTCCAACTGCGCCGGAATTTCCACCACCCAAGATTGGGTCTCTAAAGTCGGCTCTGCAACTCCCCTCGACGCCGCGTGCGGCGGCGACTTGACCGGACTTACCCACTGCGGCGCCTGTGTCGACGCCGGCATGAAACTCACCTCTCGGCTCATGGCTCTCGACCCAAATGGAACCAAGTGCTTTTACTTCACCGTTCTTTACGCTGCTGGAATCGCCAACGAATTGGGTCCTAAAGACACCAGAGTCGCTTCTTGTATCATGGGGTTGCCATTGAAGGCCTCGGATAGTTACAGAACGGCAACCCATGTGAGCAGAACGGCTCTAATGGCGGTGGCCTTTGGATTCACAGTCGTTCTCGTTACATTTCTCGTTGTAGCTGCGGTTTTGGTTCTGAGATTCAAGAAGAAACGGCTCAAAAGACAAGAACAAGAACAGAAACTCCCCAATTTGGGGGCGAAATGGTTCGGTATAACAGAGCTCGAAAAGGCCACTAATGGATTCTCTCAGAGGAACCTAATCGGCCAAGGCGCAGATGGGTTCGTTTACAAAGGGAAACTTTCAGATGGAAGTTCAGTGGCTGTGAAACAAATCATCGATTCAGATTCAGAAAGGGACGAAGATTTCACGAACGAAGTCGAAATCATCAGCAAAATTAGACATAGAAATCTCCTTTCTCTTCGAGGCTGTTGCAAATCCCAAAAGAGGAAATTCTTGGTCTACGATTTCATGCCGAACGGCAATCTCAGCGACCGTCTCTTCAGCAAGAACAACAGAAACCCATTGACATGGCCGCAGAGAAAAGCCATGATTCTGGACATAGCAAGAGGATTGAATTACCTGCATTACGGAATCAAACCCGCGATTTACCACCGCGACATCAAGCCCACGAACATCCTTCTGGACTCGGACTCGCGGGCCAGACTCGCGGATTTCGGGTTGGCGAAGCAGAGCAAAGAAGGGCAGTCGCATTTGACGACGAGGGTCGCCGGAACTCATGGGTACTTGGCGCCGGAGTACGGGCTGTACGGGCAGCTGACCGAGAAGAGCGACGTGTACAGTTTTGGGATAGTGATTTTGGAGATGATGAGTGGGAGGAAAGTGCTGGAGAGTTGGGATTTGATTACGGATTGGGCTTGGAAGCTGGTGAAGTCGGGGGACGTGGAAGCGATTTTGGAGGAAGCGATTCGAGAAGGCGGAGGGGCAAAGTTGGTAATGGAGAGATTTGTTAATGTGGGCCTGCTTTGTGCTCATGTGAATGTGGGCTTTAGGCCCACGATTGATGAGGCTTTGAAGATGTTGGAAGGGGATATTGAAATTCCACAATTACCAGAACGCCCTTTGCCATTTTCTCATCATTCCTTCAAGTTCCCCTCCCATGGAATCGAACCAGAACAACCAAACCCTCCACAGCCTTTTCTTCTCGTATCTATGGAGCAATGCAGCGTCGTTCTTTCTCCGAATTTCACGATGAAAGGGCCAATGATCGGTGAATTTGGGGCACTGTTCCAGAGTTCCAGGATAAATGTTGTTCGGACTAAGATCAAAGACTTTGCTCGTGTTGCAGTAAGTTGTGGACGGTGTCAACGGTTTATGAAGCCTCTTGCTTCCAGCTGTGCAAAGTTGAGGTTTAAGCCACTTTCTGAAGAGGTTACGAGCAAGTGTATATTGCTCATTTATATCGAAGGTCCAAGTCTAGATGGAGAAGTTTTCTCATTAACGTTGAATACTTGA 2076 50.0 MSSHLFFTLLSILFVVSSSSSLCPIDFSYVQTLPWDTAPCRRPNAAVGHCCQTLLSLFGIGLAQHLKETSLFDLTNSTSSSSCLSSFQSKLSSMALPSSLVPNCFQNPSQFVANSSNCAGISTTQDWVSKVGSATPLDAACGGDLTGLTHCGACVDAGMKLTSRLMALDPNGTKCFYFTVLYAAGIANELGPKDTRVASCIMGLPLKASDSYRTATHVSRTALMAVAFGFTVVLVTFLVVAAVLVLRFKKKRLKRQEQEQKLPNLGAKWFGITELEKATNGFSQRNLIGQGADGFVYKGKLSDGSSVAVKQIIDSDSERDEDFTNEVEIISKIRHRNLLSLRGCCKSQKRKFLVYDFMPNGNLSDRLFSKNNRNPLTWPQRKAMILDIARGLNYLHYGIKPAIYHRDIKPTNILLDSDSRARLADFGLAKQSKEGQSHLTTRVAGTHGYLAPEYGLYGQLTEKSDVYSFGIVILEMMSGRKVLESWDLITDWAWKLVKSGDVEAILEEAIREGGGAKLVMERFVNVGLLCAHVNVGFRPTIDEALKMLEGDIEIPQLPERPLPFSHHSFKFPSHGIEPEQPNPPQPFLLVSMEQCSVVLSPNFTMKGPMIGEFGALFQSSRINVVRTKIKDFARVAVSCGRCQRFMKPLASSCAKLRFKPLSEEVTSKCILLIYIEGPSLDGEVFSLTLNT 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7522551 7527570 - Lag0037591.1 Lac2g0953 598217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0953 691 FunFam Receptor-like serine/threonine-protein kinase At4g25390 248 357 - -
Lac2g0953 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g0953 691 PANTHER OS01G0750732 PROTEIN 32 551 IPR050885 -
Lac2g0953 691 ProSiteProfiles Protein kinase domain profile. 282 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0953 691 Gene3D Phosphorylase Kinase; domain 1 242 357 - -
Lac2g0953 691 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 358 556 - -
Lac2g0953 691 CDD STKc_IRAK 288 550 - -
Lac2g0953 691 Pfam Protein kinase domain 284 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0953 691 Gene3D Transferase(Phosphotransferase) domain 1 358 555 - -
Lac2g0953 691 SMART serkin_6 282 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g0953 691 Pfam SPARK 18 176 IPR043891 -
Lac2g0953 691 SUPERFAMILY Protein kinase-like (PK-like) 263 549 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0953 Lac-Chr2:7522551 Lac5g2500 Lac-Chr5:43542531 3.60E-158 dispersed
Lac2g0953 Lac-Chr2:7522551 Lac2g0958 Lac-Chr2:7569099 6.30E-08 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85999 PF00069 Pkinase 2.70E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0953 - - - 0.0