Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0958 ATGGCCCAAAGCCCACATAGTCTCCGAAAGTCTTCCTCTCTCCGACTGAGCGCGGGAAAAACAAAAACCCTATTATCGGTGCCGGAGAGTTGGATCAGTGGCTGTGGAGGGAAAGAAATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTGGCGCATCAGGATGAAGTGGTTCGGGTTCTCACCAACACTCTCGAGACTGCTAGTTGTCCTCACATGCTCTTCTATGGACCGCCTGGTACCGGAAAAACCACCACCGCTCTCGCGATTGCCCATCAACTATTCGGTCCTGAACTTTACAAGTCCAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATCAATGTTGTTCGGACTAAGATTAAAGACTTTGCTGGTGTTGCAGTAAGCAGTGGCCAGCGCCAAGGGGGCTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGTACCATGGAAACACACTCCAAAGTAACACGATTCTTTTTTATATGCAACTATATCAGCAGGATTATAGAGCCCCTTGCTTCAAGGTGTGCAAAGTTTAGGTTTAAGCCACTCTCTGAAGAGGTTATGAGCAAGCGTATATTGCACATTAGTAATGAAGAAGGTCTGAATCTAGATGCAGAGGCCCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCGGCACGCTTATTTGGATCATCGATCTCTTCCAAGGATCTGATTAGTGTGTCTGGGGTTATACCTCGGAAGGTTGTTGATGCCCTTTTTGCCGCTTGTAAAAGTGGTAACTTTGATCTTGCGAACAAGGAAGTCAACAATGTAATTGCTGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAGGTGGTTGTTGAAGCCCATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCTGAAGCAGATAAGTGTCTGGTCGATGGTGCGGATGAATATTTGCAGCTGCTCGATGTGGTTAGTCAAACAATGCAAGCTCTAAGTAGTATGCAACTGTAA 1128 46.01 MAQSPHSLRKSSSLRLSAGKTKTLLSVPESWISGCGGKEMAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHISNEEGLNLDAEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVIPRKVVDALFAACKSGNFDLANKEVNNVIAEGYPVAQMLSQIFEVVVEAHDLQDEQKARICKKLAEADKCLVDGADEYLQLLDVVSQTMQALSSMQL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7569099 7573530 + Lag0037596.1 Lac2g0958 598222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0958 375 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 48 370 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Lac2g0958 375 FunFam Replication factor C subunit 4 215 278 - -
Lac2g0958 375 Gene3D - 42 212 IPR027417 -
Lac2g0958 375 Gene3D - 279 369 - -
Lac2g0958 375 FunFam Replication factor C subunit 5 42 213 - -
Lac2g0958 375 CDD AAA 65 205 - -
Lac2g0958 375 Pfam ATPase family associated with various cellular activities (AAA) 84 212 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac2g0958 375 CDD HLD_clamp_RFC 213 272 IPR047854 -
Lac2g0958 375 SMART AAA_5 80 213 IPR003593 GO:0016887(InterPro)
Lac2g0958 375 FunFam Replication factor C subunit 4 279 368 - -
Lac2g0958 375 Gene3D - 215 278 - -
Lac2g0958 375 Pfam RCF1/5-like, AAA+ ATPase lid domain 224 261 - -
Lac2g0958 375 SUPERFAMILY post-AAA+ oligomerization domain-like 279 365 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Lac2g0958 375 Pfam Replication factor C C-terminal domain 280 364 IPR013748 -
Lac2g0958 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 272 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0958 Lac-Chr2:7569099 Lac5g0598 Lac-Chr5:6758796 1.80E-50 dispersed
Lac2g0953 Lac-Chr2:7522551 Lac2g0958 Lac-Chr2:7569099 6.30E-08 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0958 K10755 - csv:101221224 626.706