Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0961 ATGCAGAAGCCGAAGCCATTTGCCGGAGCCAACGTGTTCGTGTCTCGCAATCTTGTTGCTCCAGAGATATTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCCGAGGTCTTCCTCTGTTGCGATCCCTCTCGAAACGGGCCTAACGATTACCATGTTATCTCTTCCGCCGACCATGAAAAGTTCGAGGATCTTTGCGCGAAGGGGTGCAATTTGCTAGGTCCACAGTGCGTGCTTTCGTGTGCAAAAGAGTACAGACCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCTATGGATGGTGTGAAGATTCTGGCATCCGGTTTTCAGGCGGATGAAAAGGTTGAGATAGGGAAGTTAGTTACTGCAATGGGAGGAGTATTGCATTCGAAAGCATCTCTAGATGTCACCTTTGTCATCGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCACTTAATATTTCAAAGAAACCAATTGTCACAATTGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCTCAGGAGGGATATCGCGTCCTTCCATTTTCTGGATTGAATATTTCAGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCTGATCTTACAAGAAAGTGTACACATTTGATTTGTGACAAGTACAAGGTTGCACGAACATGGGGTCATATCAATATTGTTACTCGGAAATGGTTTGATCAATCCATAGCTAGAAGAGCATGTCTTAATGAGGAGTCATACCCTGTTGGTAGCATTTCTGGAACTTCAAATAAAATGGCAAGGGGTTGCTTGACTTCTCACAATAGCCAAGAAAAGGTTACTGCGAACTTGCAAGCTGCACCATCCTCATTTATTGCCGATTCAAATTTCTCAGCAGTTTCTGGTCCTGGGTTTTCAGACATGGATTTAGAAGCTACGCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTGTAAATGAGGCTGATGTTGAAGTGCCAGTTCCAATGGGAAAGCACGAAGCAAACACTGATAATTGCATTGCAAATGACTTCCAAGCTGAAGACAATGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGCAGAATTGTGAATATGATTCGCAGAGGTGGAGGCTCCCGATACATGCTGTTCAATGACAAGTTAACACACATAATAGTTGGAAATCCTTCGGAAATGGAGAAAAAGGAGGTAAGAGATCTTGCAGCTTCAGGTGTTGTCCATGTGGTTAGAACCGCCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTCTTGGCAGACATATGGCCTATGATGAACTTATTCCAAAAGCATCCAGTAAAACAAGCACCATCATCATGGATCAGAATAAAGCTCCTAATGTTCATCCAATCATGCCATCAAATGGGTTAGAAGGGAATATTCATGTTAGAATTGGAAAGACATCAATGATAGAGGAAAAAGTTCAAGAAAAAAGTGAAGCAAATGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGGCAACCTTCTGCAGCAAATGCTACAAACAAGAGTCAAGAAAAGATGCGGCGTGATTTCACTGTTCCAAATGGGAAGTCATCGTGTGTGTTTGAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGAAGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGGGGAGGGGAGGTTGTCGAGGATCATATGAAACAGAAAGTGCACTTCACTGTTGAGTGTCATGGTGAGACACCAAGGAGTGCAGATGTTCATACTACGTACGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGACCACATTCTCTATTCTCCACTTCCTTGTCGTGTCCCTTTGCCTGGGTTTGAAAATAATCGGTTCTGTGTTTCACAATATGAAGATAAAGATAGAGTCTTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGATGGGCCAAAGTATGAGGCTGCTTGTAAATGGGGAATACATTCAATTACAGCTGAATGGATATATGAGTGCGTCAGACAGAGTAAGATTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTAACTGCTCAAGACAGAGAGGCAGGCTTGTACACTGTAAGTCAGTTTCCTACACAAGCTGTCCAAACGATAGCCAGTGAAAGTCAATCCCAGTTCCCTATCCATTCTGCTATCCTGAGAGACCAATCAGCAAGAACTAACGGTAGCTCTATGGGAGAAGTTGAACAATTAAGTTTAAGTAATAAAAAGCCCAAGTTCCTTGACGAAGCTAAACAAAAGCGTCCACCTTTTGTTGGAAATAGTCTCGCTCATTTTGACTGCAATGTGAACTCCACAAGAGAAACTACATCAAAATCTTCTGTTGGAGCTTCACATGTTCCTGATGTCGCTGCCGCAATTGAGGACTTGTTGGAGCAGACAAGTAAGATTCATGATCAGAAGTCACCTGGAAAGACTGGCTGCGACAAAATTATTTTCCCGCCCGACTGTTCCATCATTGGTGAAGACCATTCAGAAGCTCATCCAATTAGTGGTTTATCTAACCAGTGGTTAAAAAGAGCTGAAAGAAAGGAAGATGTCAGCAATCCTACTAGTGGAGATGGGGGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAGGAGGATTTGTCGGGAAGGCAAATGCTCATAGACAGAGTTCGAACCCGGAGTAGCTTGACTTGA 2898 42.86 MQKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADHEKFEDLCAKGCNLLGPQCVLSCAKEYRPLPQQGFTCCLAMDGVKILASGFQADEKVEIGKLVTAMGGVLHSKASLDVTFVIVKNVLAAKYKWALNISKKPIVTIAWLQQCWIEHRVVPQEGYRVLPFSGLNISVSRIPADERKEIEKLILQNGGRYSADLTRKCTHLICDKYKVARTWGHINIVTRKWFDQSIARRACLNEESYPVGSISGTSNKMARGCLTSHNSQEKVTANLQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFVNEADVEVPVPMGKHEANTDNCIANDFQAEDNDLYLSACRIKVVGFEASEMRRIVNMIRRGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDLAASGVVHVVRTAWLEDCDRQKKEIPVLGRHMAYDELIPKASSKTSTIIMDQNKAPNVHPIMPSNGLEGNIHVRIGKTSMIEEKVQEKSEANVSGDRTMKLSQKRQPSAANATNKSQEKMRRDFTVPNGKSSCVFEGKIFCFSSSFPEDRRAEIVEWINQGGGEVVEDHMKQKVHFTVECHGETPRSADVHTTYVSSHWVRSCLEDGCLWDTNDHILYSPLPCRVPLPGFENNRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSDGPKYEAACKWGIHSITAEWIYECVRQSKIVSLDLYRPKEVTAQDREAGLYTVSQFPTQAVQTIASESQSQFPIHSAILRDQSARTNGSSMGEVEQLSLSNKKPKFLDEAKQKRPPFVGNSLAHFDCNVNSTRETTSKSSVGASHVPDVAAAIEDLLEQTSKIHDQKSPGKTGCDKIIFPPDCSIIGEDHSEAHPISGLSNQWLKRAERKEDVSNPTSGDGGAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSLT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7602848 7610928 - Lag0037599.1 Lac2g0961 598225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0961 965 CDD BRCT_TopBP1_rpt2_like 186 256 - -
Lac2g0961 965 Pfam BRCT domain, a BRCA1 C-terminus domain 562 639 IPR001357 -
Lac2g0961 965 SUPERFAMILY BRCT domain 186 267 IPR036420 -
Lac2g0961 965 Gene3D BRCT domain 351 456 IPR036420 -
Lac2g0961 965 FunFam Transcription coactivator 97 185 - -
Lac2g0961 965 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Lac2g0961 965 Gene3D BRCT domain 31 94 IPR036420 -
Lac2g0961 965 SUPERFAMILY BRCT domain 562 647 IPR036420 -
Lac2g0961 965 ProSiteProfiles BRCT domain profile. 558 645 IPR001357 -
Lac2g0961 965 MobiDBLite consensus disorder prediction 516 550 - -
Lac2g0961 965 CDD BRCT 103 170 - -
Lac2g0961 965 ProSiteProfiles BRCT domain profile. 182 266 IPR001357 -
Lac2g0961 965 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 24 780 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Lac2g0961 965 Pfam BRCA1 C Terminus (BRCT) domain 373 446 IPR001357 -
Lac2g0961 965 FunFam Transcription coactivator 36 94 - -
Lac2g0961 965 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Lac2g0961 965 MobiDBLite consensus disorder prediction 912 940 - -
Lac2g0961 965 Gene3D BRCT domain 555 651 IPR036420 -
Lac2g0961 965 SMART BRCT_7 184 256 IPR001357 -
Lac2g0961 965 SMART BRCT_7 655 731 IPR001357 -
Lac2g0961 965 SMART BRCT_7 97 174 IPR001357 -
Lac2g0961 965 SMART BRCT_7 370 450 IPR001357 -
Lac2g0961 965 SMART BRCT_7 4 86 IPR001357 -
Lac2g0961 965 SMART BRCT_7 560 635 IPR001357 -
Lac2g0961 965 Gene3D BRCT domain 97 184 IPR036420 -
Lac2g0961 965 ProSiteProfiles BRCT domain profile. 368 460 IPR001357 -
Lac2g0961 965 Gene3D BRCT domain 656 748 IPR036420 -
Lac2g0961 965 CDD BRCT_TopBP1_rpt2_like 656 731 - -
Lac2g0961 965 Gene3D BRCT domain 185 269 IPR036420 -
Lac2g0961 965 MobiDBLite consensus disorder prediction 523 543 - -
Lac2g0961 965 FunFam Transcription coactivator 350 460 - -
Lac2g0961 965 SUPERFAMILY BRCT domain 654 742 IPR036420 -
Lac2g0961 965 ProSiteProfiles BRCT domain profile. 658 741 IPR001357 -
Lac2g0961 965 SUPERFAMILY BRCT domain 370 454 IPR036420 -
Lac2g0961 965 FunFam Transcription coactivator 556 651 - -
Lac2g0961 965 Pfam twin BRCT domain 190 248 IPR001357 -
Lac2g0961 965 Pfam twin BRCT domain 103 166 IPR001357 -
Lac2g0961 965 Pfam twin BRCT domain 663 723 IPR001357 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0961 K10728 - csv:101212525 1606.65