Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g0963 ATGGGAAGAGGAAAGATTGAAATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTGACATACTCAAAGAGAAGAAATGGGATAATCAAAAAGGCCAAAGAAATCACTGTTCTTTGTGATGCTCAAGTTTCTCTTGTCATTTTTGCTACCTCTGGAAAAATGCATGAATATTGCAGCCCTTCTACACCGTTGGTTGACATCTTGGATAAATATCACAAGCAATCTGGGAAGAGACTCTGGGATGCTAAGCATGAGAATCTGAGCAACGAAATGGATAGGGTTAAGAAAGAAAATGACAACATGCAGATTGAACTCAGGCATTTGAGAGGAGAAGATATAACTTCTCTCAACTACAAGGAGCTAATGGCTCTTGAAGAAGCTCTTGAAAATGGCCTCACTGGTGTTCGTGAGAAGCAGGAGAGAATGATGGAAGAAGAGAACAAGCGCCTGAACTATGAGCTGTACCAAAAGGAGATGGTAGCAATGGGAGATAGTGTGAGAGAGATGGATAATGGATATAATCAAAGAATGAGAGATTTCAACTCTCAGATGCCTTTTGCCTTCAGAGTGCAGCCCATTCAGCCAAATCTACAAGAAAGGATCTAA 606 40.76 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAQVSLVIFATSGKMHEYCSPSTPLVDILDKYHKQSGKRLWDAKHENLSNEMDRVKKENDNMQIELRHLRGEDITSLNYKELMALEEALENGLTGVREKQERMMEEENKRLNYELYQKEMVAMGDSVREMDNGYNQRMRDFNSQMPFAFRVQPIQPNLQERI 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7619653 7623313 + Lag0037601.1 Lac2g0963 598227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g0963 201 Gene3D - 13 100 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 ProSiteProfiles K-box domain profile. 84 183 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac2g0963 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 170 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac2g0963 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 Pfam K-box region 82 151 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac2g0963 201 Coils Coil 77 111 - -
Lac2g0963 201 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac2g0963 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac2g0963 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0174 Lac-Chr2:1321950 Lac2g0963 Lac-Chr2:7619653 2.00E-35 dispersed
Lac2g0963 Lac-Chr2:7619653 Lac6g0810 Lac-Chr6:6986829 2.00E-24 dispersed
Lac2g0963 Lac-Chr2:7619653 Lac1g3453 Lac-Chr1:53893475 1.50E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23484 PF01486 K-box 6.60E-17 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g0963 K09264 - csv:101222239 389.037