Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1040 ATGACGTCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGAGAATCTGAGGAAGGAATAGTTGTCCGGGAATTCTGTGCAAATGGGATCTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTCAAGAGGCCGAATCTTCATTACGAGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTTGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAAAGATTACAGCCTTGCATGTCTGAGAAGACGCCTCCAAAAAAGGGACGTTCGCGCTCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTGGTGCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAATGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAGGGAATTCCTGATGGACAAGTGGAGGGTAGATTGCAAGAGACTGTCAATCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTACCAGGAAGCAATATCTGCCTATAGGCGTGCCCTCTTAAGCCAATGGAACCTCAATAATGAAAGTTGTGCTAGGATACAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGATGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGATGGTTCATATGTACCGAAAAATAATTTGGAAGAAGCAATTCTACTTTTGATGCTTATTGTGAAGAAGTGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATATGCTCTATCCTTATGCAGCCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCGGCAGGACAGAACAAAGTTGCCTTGAATCTTCTGAGAAAGTCTCTACACAAACACGAGCAACCAGATGATGTAGCAGCCTTATTACTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATAAGCAATTGTATAGGAGATGAAGAGCATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCGTCCTCTGACTATGAGAGGTCCCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTAGAGAGCAATAACTTAGATTTGATGCTCGAGTTAGGAGTACAGTATTCAGAATATCGGAATTTGAATGCTGCTTTGCAATATGCAAAGAAGTTCATTGATGAAACTGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAAAAGAGATTTTCGGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAGACCACAAAATGGGAACAAGGACCACTTCTCAGACTCAAGGCCAAGCTGAAGATCTCTCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTCCTTGCATTAGTTCAAGCGCAAAAGAAATCGTTTGGGCCGCTCAGAATCGTCCCCCAGGTTGAAGATGATAAACTGAATGAATTTGAAGTTTGGAATGGTCTGGCCAATTTATACTCCAGCCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGAAAAGCCAAAGAGCTGAAAGAGTTCTCCCCAGAAATGTCCTATCTCTTTGAATGCTTTGGCATAAATGACTTTTTCACAGCTGAAATGTTCATCAAATCTGTTGTTCCACCAGGTTTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTATATTAACGCTCTCCTTCTCGAACCAACTTATGTTCCTTGCAAAGTTTTGATTGGTGCTCTTTGGTCGAAAGCGGGCCCGGATGCATTGCCTATAGCAAGAAGCTTACTTTCAGACGCATTGAGATTAGATCCTACGAACCGTAAGGCTTGGTTTTACTTGGGGGTGATTCATAGGGATGAAGGACGAATGGCCGATGCTATAGACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAACTTCAGCAGTATTCTCTAG 2190 43.42 MTSTVDEDDREPAMESGESEEGIVVREFCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCMSEKTPPKKGRSRSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVEGRLQETVNQAVELLPELWKQAGCYQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVDAGPPSLAVQLDGSYVPKNNLEEAILLLMLIVKKCYLGKIKWDPSVMEHLIYALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAISNCIGDEEHLKGVGLRLLGLCLGKQAKMSSSDYERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSHWKDAEICLGKAKELKEFSPEMSYLFECFGINDFFTAEMFIKSVVPPGLMCEGREKIQEALAAYINALLLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIENFSSIL 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8275527 8282189 - Lag0037678.1 Lac2g1040 598304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1040 729 MobiDBLite consensus disorder prediction 1 21 - -
Lac2g1040 729 ProSiteProfiles TPR repeat profile. 687 720 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SUPERFAMILY TPR-like 46 464 IPR011990 GO:0005515(InterPro)
Lac2g1040 729 SMART tpr_5 617 650 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SMART tpr_5 687 720 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Lac2g1040 729 SUPERFAMILY TPR-like 419 592 IPR011990 GO:0005515(InterPro)
Lac2g1040 729 Gene3D Tetratricopeptide repeat domain 623 727 IPR011990 GO:0005515(InterPro)
Lac2g1040 729 PANTHER PROTEIN NPG1 17 599 IPR043376 -
Lac2g1040 729 Gene3D Tetratricopeptide repeat domain 242 600 IPR011990 GO:0005515(InterPro)
Lac2g1040 729 SUPERFAMILY TPR-like 559 716 IPR011990 GO:0005515(InterPro)
Lac2g1040 729 Pfam Tetratricopeptide repeat 671 714 - -
Lac2g1040 729 Pfam Tetratricopeptide repeat 39 91 - -
Lac2g1040 729 Gene3D Tetratricopeptide repeat domain 39 237 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1040 Lac-Chr2:8275527 Lac7g0564 Lac-Chr7:4460765 2.40E-165 dispersed
Lac2g1040 Lac-Chr2:8275527 Lac11g2593 Lac-Chr11:41923014 9.00E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1040 K21843 - csv:101206641 1316.6