Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1105 ATGCTCGAAGCCCCCTTCTCAGACCATGAAATACTCAAGGCAGTTAACGACCTTGGCTCTAACAAGACCCCGGGGCTAGACGGATTCATAGCTGAATTCTTCAAAAAATCCTGGAACATTCTCAAGGATGACATTCGGGGAGTGTTCAATGATTTTTTCAAGAATGGAATCATCAATGCTAACTTGAATGAGACTTACATTTGTCTCATCCAAAGAAGCAAGGAGCCAAAAAGATTAAATAAAGTCTTACTCGATACAATATCAGAATATCAATCAGCCTTCGTTGCTAATCGACAAATTCTTGATGCATCATTAATTGCTAATGAATTGATAGATGAATGGAAGAGGAAAGGGCAAAAGGGCATGGTCATCAAGCTAGATATAGAAAAGGCTTTTGATATGGTTTATTGGGGCTTCCTTGACAACATTTTAGAAGCCAAAGGCTTTGGGCAAAAATGGAGATTATGGATAAAAGGTTGCATATCATCAGCCAACTACTCGATTATTATCAATGGCAAACTGAGAGATAGTCTTAGTAGATTGCTTACTGAGGCAGAAAAGCTTGGCTCCATTGTGGGCTTCCGGTTGGGCATGGGTCAGAATGCCAATCATGTCTCTCACCTACAGTTTGCAGACGATACCATTCTCTTTTCCTCATGCGATCAGTCTCATCTCACCAACCTATTCAAGGTCATTCAACATTTTGAAATGGTTTCAGGCTTAAAAATCAATCGACTGAAGACAGAACTTTTGGGGCTTGCACCCAAGAAGATCACCAAATCCATTGAGAAGATGTTCAGATCGTTCCTTTGGCAAGGTGGTGCTGATAAGAAGGGTTGTCATCTTCTGAAATGGTCCTACATTCAATTGCCCACCGAGGAAGGAGCGAAATGGGCGTGGAGATTTTACCATGAGCCCGAGGCCCTTTGGAGGAGACTCATGGTATCTAAGTATGGACTTGACATCAACCCACACAAGATGGGTGGACATTCGATGCATTCTTCAAAGGACCATGGAAAGCCATTTACAAAACTCGGCATCTCATTTATAACTCTATTATCATCAGAGCTGGCAGGGGGGGATAAATCTCTATTCTGGAAAGACATATGGCTAGGTGCATCCTCTTTACAATCATCATTCCCATCGCTATTCAATCTATCGCTTAAGAAAGAGGCTAAGATTGCTGATTTATGGAATCCAACCGAGGGGCTTGGAACTTGCACCTTAGGAGACATCTTCGGGACTCCGAAATTATGGAATGGGCTTTATTATCGCATCAACTATCCACCTTTTCCTTCAGAGATGTGGAAGACTCATGGATATGGCATCTTGATGAAAACGGTGTTTTCTCCCTTGGAACTCTTACCAGAAATTTGGCTTCAAATTCTTTACCGAACAGCACTGAATTTTACACTAATTGTGGAAAGCCACGCATGCATCAATACTGCCGACATTATTCAGAGGAGATTTCCAATTCATCACTATCCCCCAACTGCTGCAGCATGTGTCATAGGGCTGGAGAATCTCAAATCCATCTATTCAGTGATTGTGAGTTTGCGTCAGCTTTTTGGGACTTCATTCAAAGCGCTTTTGGATGGCAAATCGGTCGATCGGGTGATATTCTCTCCCTTCTTCACTATACTCTCCTTATACTCTCCTGGAATTTATGATATTCTTGAAGGTTATGATACTATTGGGAGAGGAAATCGTGCATTATCTGCTCAAATAGATGCTTTAACTGATATGAAATTTACGTATGTGTTGTCCTGTCAATCTTTTGGAGCACAAAAAGCTTGCGGTGATCCCCGTGCGAAAGACATTCTTGACTTGATGATAAGGTATCCATCTCTTCGTGTTGCTTATGTTGAGGAGAAAGAAATGCCAGACAATGAGAAAGTTTATTCATCTAAGCTGATTAAAGCTGTAAATGGTTTTGATCAGGAAATATACAGCATAAAGCTTCCTGGTCAGCCACACATTGGGGAAGGGAAACCTGAAAACCAAAATCATGCCATAATTTTCACACGTGGTGAAGCTCTTCAAACAGTTGATATGAACCAGGATAATTATTTGGAAGAGGCGCTGAAGATGAGAAATCTTCTTCAAGAATTTTTTAAACCCAAAGTACGGAAGCCACCTGCGATTCTAGGTTTGAGGGAGCACATATTCACTGGAAGTGTTTCTTCCTTAGCATGGTTCATGTCATATCAAGAGACGAGCTTTGTCACAATTGGTCAAAGAATTCTTGCCAATCCTCTCAGGGTACGATTTCACTATGGACACCCAGATGTGTTTGACAGGGTGTTTCACATTACGAGAGGTGGCATTAGCAAAGCATCAAAAACCATTAACTTGAGCGAAGATGTTTATGCAGGATTCAACTCGACATTACGTCGGGGATATATTACATACCATGAGTACATGCAAATAGGTAAAGGCCGTGATGTAGGACTGAATCAGATCTCCAAGTTTGAAGCCAAGATAGCAAATGGAAATAGTGAACAAAGTCTAAGCCGGGATATATATCGCCTTGGGCAACGATTCGATTTCTTCCGGATGCTATCTTGTTATTACACTACAATTGGATACTATTTCAGTAGCCTGATATCAGTACTTGGAATTTATGTTTTCCTCTACGGACAACTATACCTTGTTCTAAGTGGGTTGGAAAAATCTCTTCTTCTTCAAGCTAGAATGCAGAATGTCCGATCTTTGGAAACAGCTCTTGCTTCACAGTCATTTATACAGCTTGGGCTCCTTACAGGCTTACCAATGGTCATGGAAATTGGACTTGAAAGAGGATTTCTTACAGCCCTCAAAGATTTTGTTCTCATGCAGTTGCAGTTAGCAGTTGTTTTCTTCACATTTTCACTAGGAACAAAAACTCATTACTTTGGCCGCACAATACTTCATGGGGGTGCAAAGTACAGACCTACTGGGCGTAAGGTAGTGGTCTTTTATGCCAGTTTCACTGAAAACTACAGATTGTATTCAAGAAGTCACTTCGTTAAAGGATTCGAGCTACTGCTTCTGTTGGTTGTCTATGATTTGTTCAGACGATCTTATCAGAGCAGCATGGCATATATGTTGATCACTTACTCCATCTGGTTCATGTCAATCACTTGGTTATTTGCACCATTTTTATTCAATCCCTCTGGGTTCAGTTGGGCCAAGATAGTAGATGACTGGAAAGAATGGAATAAGTGGATTAAGCAGCAAGGTGGTATAGGAGTTCAGCAGGACAAAAGTTGGCAGTCTTGGTGGGATGATGAACAAGCCCACCTTCGTCATTCAGGACTTGTTTCCAGGTTGATCGAAGTACTTCTCTCATTACGGTTCTTCATATATCAGTATGGACTCGTGTATCACCTAGATATCTCGCAACATAGTAGCAATTTTCTGGTTTATGTGCTTTCTTGGGCTGTGATTGCTGCAATTTTCTTACTAGTCAAGGCAGTAAACCTGGGGAGGCAGCAATTCAGTGCCAACTATCATTTCGTATTCAGACTATTCAAAGCGTTTCTCTTCCTTGGCGTCCTAGCCGTAATTATTTCTCTATCAGTTGTCTGTCAATTATCTCTGAAGGACATGGTCATCTGCTCTCTCGCCTTCCTTCCAACTGGATGGGGATTGATTTTGTTTGCACAAACTGTGAGGCCAAAAATAGAGCATACTTGGCTGTGGGACTTCACCAGGGTTCTTGCCAAGTCATACGATTACGGTATGGGCGTCGTTCTCTTCGCACCTGTAGCTACTCTGGCATGGCTTCCAAATATATCCGACTTCCAGACTCGTTTCCTCTTCAACGAGGCATTCAACAGGCACTTGCATATCCAACCAATTATTGCTGGGAAACAGAAGCACAAGTGA 3870 41.71 MLEAPFSDHEILKAVNDLGSNKTPGLDGFIAEFFKKSWNILKDDIRGVFNDFFKNGIINANLNETYICLIQRSKEPKRLNKVLLDTISEYQSAFVANRQILDASLIANELIDEWKRKGQKGMVIKLDIEKAFDMVYWGFLDNILEAKGFGQKWRLWIKGCISSANYSIIINGKLRDSLSRLLTEAEKLGSIVGFRLGMGQNANHVSHLQFADDTILFSSCDQSHLTNLFKVIQHFEMVSGLKINRLKTELLGLAPKKITKSIEKMFRSFLWQGGADKKGCHLLKWSYIQLPTEEGAKWAWRFYHEPEALWRRLMVSKYGLDINPHKMGGHSMHSSKDHGKPFTKLGISFITLLSSELAGGDKSLFWKDIWLGASSLQSSFPSLFNLSLKKEAKIADLWNPTEGLGTCTLGDIFGTPKLWNGLYYRINYPPFPSEMWKTHGYGILMKTVFSPLELLPEIWLQILYRTALNFTLIVESHACINTADIIQRRFPIHHYPPTAAACVIGLENLKSIYSVIVSLRQLFGTSFKALLDGKSVDRVIFSPFFTILSLYSPGIYDILEGYDTIGRGNRALSAQIDALTDMKFTYVLSCQSFGAQKACGDPRAKDILDLMIRYPSLRVAYVEEKEMPDNEKVYSSKLIKAVNGFDQEIYSIKLPGQPHIGEGKPENQNHAIIFTRGEALQTVDMNQDNYLEEALKMRNLLQEFFKPKVRKPPAILGLREHIFTGSVSSLAWFMSYQETSFVTIGQRILANPLRVRFHYGHPDVFDRVFHITRGGISKASKTINLSEDVYAGFNSTLRRGYITYHEYMQIGKGRDVGLNQISKFEAKIANGNSEQSLSRDIYRLGQRFDFFRMLSCYYTTIGYYFSSLISVLGIYVFLYGQLYLVLSGLEKSLLLQARMQNVRSLETALASQSFIQLGLLTGLPMVMEIGLERGFLTALKDFVLMQLQLAVVFFTFSLGTKTHYFGRTILHGGAKYRPTGRKVVVFYASFTENYRLYSRSHFVKGFELLLLLVVYDLFRRSYQSSMAYMLITYSIWFMSITWLFAPFLFNPSGFSWAKIVDDWKEWNKWIKQQGGIGVQQDKSWQSWWDDEQAHLRHSGLVSRLIEVLLSLRFFIYQYGLVYHLDISQHSSNFLVYVLSWAVIAAIFLLVKAVNLGRQQFSANYHFVFRLFKAFLFLGVLAVIISLSVVCQLSLKDMVICSLAFLPTGWGLILFAQTVRPKIEHTWLWDFTRVLAKSYDYGMGVVLFAPVATLAWLPNISDFQTRFLFNEAFNRHLHIQPIIAGKQKHK 1289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8753900 8760892 + Lag0037743.1 Lac2g1105 598369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1105 1289 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 568 1286 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Lac2g1105 1289 CDD RT_nLTR_like 77 277 - -
Lac2g1105 1289 Pfam 1,3-beta-glucan synthase component 566 1110 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
Lac2g1105 1289 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 77 251 IPR000477 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1105 Lac-Chr2:8753900 Lac4g2692 Lac-Chr4:45893282 7.90E-276 dispersed
Lac2g1105 Lac-Chr2:8753900 Lac11g0178 Lac-Chr11:1686209 9.10E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1105 K11000 - csv:101218479 1402.11