Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1129 ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGGCTCAGAATCCTTCAAGAACAGGAACGAAAGCGGCAGCTAGAGGATCAGTCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGGAAGGAGTCTCGTGATTCGTCATTCCTCGTCCCTGACGCCACATTGCCCCATAGAACCGCCATTTCCGCTTCTCCTTACTGCTTGCCGACGAAGAAAAGGGTCTGGGCTCTTCACCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCACCTCCGGAGGAAGAATCGATTTCGAAAACAGAACCGGAGATAGAGAAAAAGGAGAAGGAAGAGGAAAAGGAAAATGAAAAGGAAATTTCTGATGTTGAGATTGAGATTCAAGCGATTGAATCTACCCAAGAAGAAGATGAAGATGAAGAAGAAGACGATGGGATCCTATGTGCGATTTGTCAAAGCACGGATGGGGATCCTTCGGATCCAATCGTGTTCTGCGATGGATGCGATTTGATGGTGCACGCTTCGTGTTATGGTAATCCTCTGGTGAAGAACGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTTCTGAAACTCCATTTTCGTGCTGCCTCTGTCCTCTCAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATGTTGTGTGTGGCCTCTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATTGATTGCTCCAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCAGGAGGTTGTGCCATTGATTGCTCAGAGCCTAAGTGCAGTTTGGCTTTTCATGTTACTTGTGGGCTGAAGGAGGATCTTTGTATTGAATACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGAAATCATACCGACTTGTGGAAGAAGCAACAACTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG 1047 47.18 MDSLHGLPPLKRLRILQEQERKRQLEDQSLDSCSLPAKKRKESRDSSFLVPDATLPHRTAISASPYCLPTKKRVWALHPDFAPESLDLNVEYKPPPEEESISKTEPEIEKKEKEEEKENEKEISDVEIEIQAIESTQEEDEDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCIQCLASSSSKTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHVVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSGGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8975395 8977090 - Lag0037767.1 Lac2g1129 598393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1129 348 ProSiteProfiles Zinc finger PHD-type profile. 148 201 IPR019787 -
Lac2g1129 348 ProSiteProfiles Extended PHD (ePHD) domain profile. 214 326 IPR034732 -
Lac2g1129 348 MobiDBLite consensus disorder prediction 22 48 - -
Lac2g1129 348 SUPERFAMILY FYVE/PHD zinc finger 138 206 IPR011011 -
Lac2g1129 348 Pfam PHD-finger 151 198 IPR019787 -
Lac2g1129 348 CDD PHD_BRPF_JADE_like 150 198 - -
Lac2g1129 348 Pfam PHD-zinc-finger like domain 216 313 - -
Lac2g1129 348 Coils Coil 109 143 - -
Lac2g1129 348 MobiDBLite consensus disorder prediction 91 128 - -
Lac2g1129 348 SMART PHD_3 271 326 IPR001965 -
Lac2g1129 348 SMART PHD_3 150 199 IPR001965 -
Lac2g1129 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 212 IPR013083 -
Lac2g1129 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 328 IPR013083 -
Lac2g1129 348 PANTHER PHD FINGER PROTEINS 32 326 IPR050701 GO:0006357(PANTHER)
Lac2g1129 348 MobiDBLite consensus disorder prediction 88 129 - -
Lac2g1129 348 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1129 Lac-Chr2:8975395 Lac4g1712 Lac-Chr4:35973102 7.90E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23491 PF13832 zf-HC5HC2H_2 1.10E-29 CL0390 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1129 K11380 - csv:101203744 576.244