Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac2g1129 | ATGGATTCCCTCCATGGCTTACCTCCCCTCAAAAGGCTCAGAATCCTTCAAGAACAGGAACGAAAGCGGCAGCTAGAGGATCAGTCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGGAAGGAGTCTCGTGATTCGTCATTCCTCGTCCCTGACGCCACATTGCCCCATAGAACCGCCATTTCCGCTTCTCCTTACTGCTTGCCGACGAAGAAAAGGGTCTGGGCTCTTCACCCTGATTTCGCCCCTGAATCTCTGGATCTCAATGTTGAATACAAGCCACCTCCGGAGGAAGAATCGATTTCGAAAACAGAACCGGAGATAGAGAAAAAGGAGAAGGAAGAGGAAAAGGAAAATGAAAAGGAAATTTCTGATGTTGAGATTGAGATTCAAGCGATTGAATCTACCCAAGAAGAAGATGAAGATGAAGAAGAAGACGATGGGATCCTATGTGCGATTTGTCAAAGCACGGATGGGGATCCTTCGGATCCAATCGTGTTCTGCGATGGATGCGATTTGATGGTGCACGCTTCGTGTTATGGTAATCCTCTGGTGAAGAACGTACCAGAAGGCGATTGGTTCTGTATCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTTCTGAAACTCCATTTTCGTGCTGCCTCTGTCCTCTCAAAGGAGGGGCTATGAAGCCGACGAACGATGGCCGATGGGCTCATGTTGTGTGTGGCCTCTTTGTTCCTGAGGTGTTCTTTGAGGACCCAGATGGCAGAGAAGGGATTGATTGCTCCAAGATTCTGAAGAGGAGATGGAAATCCAAATGTTATATCTGCAAAACTTCAGGAGGTTGTGCCATTGATTGCTCAGAGCCTAAGTGCAGTTTGGCTTTTCATGTTACTTGTGGGCTGAAGGAGGATCTTTGTATTGAATACCAAGAAGGAAGGAGATCTGGTGCTATTGTAGCTGGGTTCTGCAGAAATCATACCGACTTGTGGAAGAAGCAACAACTAACAGGGAAGTTCAAGATTGTGGCCAGAGATGAAGGTAAGTTGTAG | 1047 | 47.18 | MDSLHGLPPLKRLRILQEQERKRQLEDQSLDSCSLPAKKRKESRDSSFLVPDATLPHRTAISASPYCLPTKKRVWALHPDFAPESLDLNVEYKPPPEEESISKTEPEIEKKEKEEEKENEKEISDVEIEIQAIESTQEEDEDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKNVPEGDWFCIQCLASSSSKTEKKVSETPFSCCLCPLKGGAMKPTNDGRWAHVVCGLFVPEVFFEDPDGREGIDCSKILKRRWKSKCYICKTSGGCAIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKQQLTGKFKIVARDEGKL | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8975395 | 8977090 | - | Lag0037767.1 | Lac2g1129 | 598393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac2g1129 | 348 | ProSiteProfiles | Zinc finger PHD-type profile. | 148 | 201 | IPR019787 | - | |
Lac2g1129 | 348 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 214 | 326 | IPR034732 | - | |
Lac2g1129 | 348 | MobiDBLite | consensus disorder prediction | 22 | 48 | - | - | |
Lac2g1129 | 348 | SUPERFAMILY | FYVE/PHD zinc finger | 138 | 206 | IPR011011 | - | |
Lac2g1129 | 348 | Pfam | PHD-finger | 151 | 198 | IPR019787 | - | |
Lac2g1129 | 348 | CDD | PHD_BRPF_JADE_like | 150 | 198 | - | - | |
Lac2g1129 | 348 | Pfam | PHD-zinc-finger like domain | 216 | 313 | - | - | |
Lac2g1129 | 348 | Coils | Coil | 109 | 143 | - | - | |
Lac2g1129 | 348 | MobiDBLite | consensus disorder prediction | 91 | 128 | - | - | |
Lac2g1129 | 348 | SMART | PHD_3 | 271 | 326 | IPR001965 | - | |
Lac2g1129 | 348 | SMART | PHD_3 | 150 | 199 | IPR001965 | - | |
Lac2g1129 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 212 | IPR013083 | - | |
Lac2g1129 | 348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 328 | IPR013083 | - | |
Lac2g1129 | 348 | PANTHER | PHD FINGER PROTEINS | 32 | 326 | IPR050701 | GO:0006357(PANTHER) | |
Lac2g1129 | 348 | MobiDBLite | consensus disorder prediction | 88 | 129 | - | - | |
Lac2g1129 | 348 | MobiDBLite | consensus disorder prediction | 22 | 47 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g1129 | Lac-Chr2:8975395 | Lac4g1712 | Lac-Chr4:35973102 | 7.90E-29 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23491 | PF13832 | zf-HC5HC2H_2 | 1.10E-29 | CL0390 | Lac | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac2g1129 | K11380 | - | csv:101203744 | 576.244 |