Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1136 ATGCCTGGGAATAAGTATAACGGTAATTCAAACGACATTTTAGACCACATTCCAGGTCGACTGGAAAGGCTCTTGCGAGAGAGAAAGCTAAGAAAAAGCAGTAAGGATTCATATTCAAACGAGGTAAACGACTATAGTAAGGAGTCTGAACTAATTGAAAATGACCTTCGTTGGAAAGAAGAAGAAAACGTTGGAATACCCTGTAAATTTTCGGAAGCTTCTGTAGCCTCAAGGCCCTTTGGCGAAGGATGTGACAAGCAAGATGGCAAGCCTCCCAGACAACGGTTGCTGGTTGTGGCCAATAGGCTGCCCGTCTCTGCAGTCAGGAGGGGTGAAGATTCCTGGTCTCTGGAGATGAGTGCTGGAGGTCTAGTGAGTGCACTACTGGGTGTGAATGAATTTGAAACGAGATGGATTGGTTGGGCTGGTGTAAATGTGCCAGATGAGGTAGGACAAAAGGCACTGACTGAAGCTTTGGCTGAAAAGAGGTGTATCCCTGTTTTCCTTGATGAAGAGATTGTTCATCAATACTACAATGGTTATTGCAACAACATTTTATGGCCTTTGTTTCATTACCTTGGCCTTCCTCAAGAAGATCGTCTTGCCACCACCCGTAGCTTTCAGTCTCAGTTTGCCGCATACAAGAAGGCAAACCAAATGTTTGCTGATGTAGTTACCAAGCACTATGAGGAGGGTGACGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGTCTCAAAGAGCGTAATCGTAAGATGAAAGTCGGCTGGTTTCTCCATACACCTTTTCCTTCCTCTGAAATCCACAGAACCCTTCCATCCCGATCAGAACTTCTACGCTCAGTACTTGCTGCTGATCTGGTTGGCTTTCACACATATGATTATGCTCGTCATTTCGTAAGTGCTTGTACTCGTATTCTTGGACTTGAGGGTACACCAGAAGGAGTTGAGGATCAAGGAAAGCTAACACGAGTTGCTGCATTCCCTATTGGTATAGACTCAGATCGATTCATACGTGCCCTCAAGATTCCTGAAGTCCAAGAACATATTGAAGAGTTAAAAGAAAGATTCAAAGGTCGAAAGGTAATGTTAGGGGTCGATCGTCTTGATATGATTAAAGGAATACCTCAAAAGATATTAGCATTTGAAAAATTCCTGGAGGAAAACCCTTATTGGCGTGATAAAGTTGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTGCCAGAATACCAAAAACTTACAAGCCAAGTTCATGAAATAGTTGGACGCATTAATGGGAGATTTGGAACATTGACTGCTGTGCCTATACATCATCTGGATCGCTCCCTTGATTTTCATGCATTATGTGCACTATATGCTGTAACTGATGTAGCGCTTGTCACATCTTTGAGGGATGGAATGAACCTTGTCAGTTATGAGTTCGTTGCTTGCCAGGATGCAAAGAAAGGGGTTTTAATTCTTAGTGAGTTTGCTGGTGCTGCACAATCTCTGGGTGCTGGAGCACTTTTGGTCAACCCCTGGAACATAATAGAAGTCACAAAATCAATTGATCGAGCATTAAATATGAGTGCCGATGAAAGAGAAAAGCGACATAGGCATAATTTTCTCCATGTGACAACACACACTGCCCAGGAATGGGCAGAAACTTTTGTGAGTGAACTTAACGATACAGTAGTTGAAGCTGAACTGAGGATAAGACAATCTCCACCCCCGCTTCCATTTGACAATGCAGTTAAACGTTATGACCAATCGACTAATCGATTACTTATATTGGGCTTCAATTCAACATTAACTGAACCAGTGGACACACCTGAGAGAAGAGGCGATCAGATTAGAGAAATGGAACTGAAACTACACCCGGATTTGAAAGAACCATTGACAGCAATTTGCAACGATCCAAATACGACAGTAGTTATCCTCAGTGGGAGTGACAGAACTGTCTTGGATGATAACTTTGGGGAGTATGACATGTGGTTGGCAGCTGAGAATGGGATGTTTCTACGCTTTACAAGAGGGGACTGGATGACTACAATGCCTGAGCATTTGAATATGGAATGGGTCGACAGTGTGAAGCATGTTTTTGAGTACTTCACAGAGAGAACTCCCCGTTCCCATTTTGAGCTCCGCGAAACTTCACTTGTTTGGAACTATAAATATGCAGATGTTGAGTTTGGAAGGCTTCAAGCAAGGGATATGTTGCAGCATTTATGGACAGGTCCAATTTCTAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCTGTTGAGGTGCGAGCTGTTGGCGTTACCAAGGGGTCAGCAATTGACCGAATATTGGGAGAAATAGTTCACAGCAAGTCCATGACGACTCCAATAGACTATGTCTTGTGTGTCGGCCATTTTCTTGGGAAGGATGAAGATGTCTACACTTTCTTTGAGCCTGAACTTCCGTCGGATACCATAGGCATGGCAAGAGCCAAGGGAACCGACGGACTTAAGTTAACTGGTGAGAGAAGATCTTCCATCAAAGTTCCTGTAAATAGGAATGGATCGAAATCGCCTCACAATAAGGTGCGGTCAAATTCGGAGAAGAAACCTTCAAATCATAACTGTGCAAATGGTCGTAAACCATCACCAGAGAAGATTCAATGGAATGTGCTTGATCTCAAGGCTGAGAACTACTTCTCGTGTGCTGTTGGACGATCTCGGACGAATGCTCGGTATCTGCTCGGATCATCAGATGATGTCGTTACATTCCTTAAGGAGTTGGCAAGTGCAAACGCGTCTTCTTGA 2787 43.45 MPGNKYNGNSNDILDHIPGRLERLLRERKLRKSSKDSYSNEVNDYSKESELIENDLRWKEEENVGIPCKFSEASVASRPFGEGCDKQDGKPPRQRLLVVANRLPVSAVRRGEDSWSLEMSAGGLVSALLGVNEFETRWIGWAGVNVPDEVGQKALTEALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVTKHYEEGDVVWCHDYHLMFLPKCLKERNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSDRFIRALKIPEVQEHIEELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDAKKGVLILSEFAGAAQSLGAGALLVNPWNIIEVTKSIDRALNMSADEREKRHRHNFLHVTTHTAQEWAETFVSELNDTVVEAELRIRQSPPPLPFDNAVKRYDQSTNRLLILGFNSTLTEPVDTPERRGDQIREMELKLHPDLKEPLTAICNDPNTTVVILSGSDRTVLDDNFGEYDMWLAAENGMFLRFTRGDWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVHSKSMTTPIDYVLCVGHFLGKDEDVYTFFEPELPSDTIGMARAKGTDGLKLTGERRSSIKVPVNRNGSKSPHNKVRSNSEKKPSNHNCANGRKPSPEKIQWNVLDLKAENYFSCAVGRSRTNARYLLGSSDDVVTFLKELASANASS 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9028314 9048573 - Lag0037774.1 Lac2g1136 598400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1136 928 MobiDBLite consensus disorder prediction 842 877 - -
Lac2g1136 928 Pfam Trehalose-phosphatase 618 824 IPR003337 GO:0005992(InterPro)
Lac2g1136 928 CDD GT20_TPS 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac2g1136 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 563 - -
Lac2g1136 928 Gene3D - 619 779 IPR023214 -
Lac2g1136 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 342 544 - -
Lac2g1136 928 Gene3D - 685 765 - -
Lac2g1136 928 Coils Coil 35 55 - -
Lac2g1136 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 87 924 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Lac2g1136 928 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 685 765 - -
Lac2g1136 928 FunFam Alpha,alpha-trehalose-phosphate synthase 619 690 - -
Lac2g1136 928 Gene3D Glycogen Phosphorylase B; 87 341 - -
Lac2g1136 928 Pfam Glycosyltransferase family 20 95 560 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac2g1136 928 Gene3D Glycogen Phosphorylase B; 342 544 - -
Lac2g1136 928 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 87 341 - -
Lac2g1136 928 CDD HAD_TPP 593 813 - -
Lac2g1136 928 SUPERFAMILY HAD-like 592 922 IPR036412 -
Lac2g1136 928 FunFam Trehalose-6-phosphatase synthase S4 731 843 - -
Lac2g1136 928 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 560 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1136 Lac-Chr2:9028314 Lac5g0203 Lac-Chr5:1772768 3.10E-125 dispersed
Lac2g1136 Lac-Chr2:9028314 Lac10g1001 Lac-Chr10:8040725 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1136 K16055 - csv:101204478 1789.24