Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1141 ATGGTTGGAATTCATTCTCAGTCCACTAGATTGCCTGCAGAAGAAGTGGAAGCTTTACAGGAAATAGGAAAGGTTTTGGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAGTGGAGACCATGGATGGATTTCTCAACCCAACCAAATCCCCAAGAATGTTTCTGGCTTTGAAAATAATCTCACCTGTGATTGCACCTTTCTCAATGCCACAGTCTGCCATGTCATCAGCATAGTTCTCAAATCGCAGAGCCTTCAAGGCACTCTCCCGCCCCATCTTGTCCGATTGCCCTTTCTGCAGCAAATTGATCTCACTCGGAACTATCTCAGCGGCCAAATTCCTCCAGAATGGGGCTCTTCGAATCTCGTCAATATTTCCCTCCTTGGAAATCGGTTGACGGGTTTGATCCCAGAGGAGATTGGAAACATCACTACTCTGGAGAATTTGGTCCTAGAAATCAATCAGCTGTCAGGAAGCATTCCTCAAGCGCTTGGAAATTTGCCCCAGATACAGAGAATACATCTTACCTCAAACAACTTTTCTGGGGAGTTGCCAACGTCACTCGGAAAGTTGACCACATTGAAGGAATTTCGAATTGGTGACAATAACTTCTCGGGCCCAATACCGAATTTCATACGTAACTGGACAGATCTTACTGAATTGTTCATTCAGGCAAGTGGATTGAGTGGGCCTATTCCTTCTGACATTGGACTATTGACAAAGTTATCTGACTTGAGAATCAGTGACTTGACTGGAGCTTCATCACCCTTTCCACCTCTTAGTAATTTGGAAGACATGACAATTCTGATATTGAGAAGTTGCAACATCACTGGAAGGCTGCCCAACTATCTGGATAGGATGCCATCCTTGAAAATCTTAGACCTCAGCTTCAACAAACTAAGTGGACGAATTCCGACCAGATTCAATGCTCTTAAAGGGTTGGATAACATGTTTTTAACTGGAAACATGCTGAATGGATCAGTGCCTGATTGGATGTTGAAAGGAAATGGGATTGATCTTTCCTATAATAATTTTACAGTCAGGGTTGCTGGGGAAAGTTGTCGGTCCCGAAAAGTGAACCTTTTTGCAAGCTCTTCACAAGACAATGATTATGGAATTCTTTCATGTTTAGCAGGCTCGTCCTGTTCAAAATCTTGGTACTCTCTTCATATAAATTGTGGTGGGAAGGAACAAACCATAAATGGAACTACAGTTTTTAAAGGAGACCGAAATACAGGCAGCTCTATGTTTTTTGTAACTGGAACAAATTGGGCAATCATCAACACCGGTAGCTTTTTGGATGATGGTAGCTCTCAAGATGAATACACTGCAACAAATTCTTCTACACTTTCTATGACAAATCCTGAACTGTACATGACTGCACGCATTTCTCCATTATCTGTTACTTACTATGGGTTTTGTATGGGAAATGGAAACTACACAGTAAGCCTCCATTTTGCAGAGATCATGTTTACTGATGACAAGTCATTCAGTAGTCTTGGCAGACGAATATTTGATGTTTATATTCAGAAAAAGCTGGTGCTAGAGAATTTCAATATAGTGGATGCAGCAGGTGGCGTTGGTAAAGCAGTCATAAAAAAAATCCCAGTTACTGTGACGAATGGTACATTGGAGATCCGCTTCTATTGGGCCGGGAAGGGGACAAATGCTATCCCTGTGAGGGGAGTTTATGGTCCTCTTATATCTGCTATATCTGTAGATCCTGACTTTGAGCCTCCAGAAGAGGGCGGAGGAACTGGAAAGTCTGGCATAACTGTAGGTGCAGTGATAGGTATTGCAGCTGCTGCAATTTTTGTTATATTATTGGTTCTCGGAATCCTGTGGTGGAGCATATGTCTACGACGGGAAAAGACACTTGAACAAGAGTTACGAGGTTTGGATTTGCAAACTTGTTCTTTTACATTAAGGCAAATAAAAGCCGCCACAAATAATTTTGACGCTGCCAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTATAAGGGCGTTCTTGCGGATGGCACAGCGATTGCAGTAAAGCAACTATCTTCAAAATCAAAGCAAGGAAATCGTGAGTTCGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTATTGAAGGAAATCAGCTTTTGTTAGTATATGAATACATGGAAAACAATAGTCTTGCCCATGCCTTGTTTGGTCAAGAAGAAAGCAAGCTACAGCTAGAATTGGATTGGTCAACAAGGCATAAGATCTGTGTTGGTATAGCAAGAGGTTTGGCTTATCTTCATGAAGAATCAAGACTAAAGATTGTCCACAGAGACATCAAAGCTACTAATGTTCTATTAGACAAAGATCTAAACCCAAAGATATCTGATTTCGGCTTGGCCAAGCTTGATGAAGAAGGAAATACCCACATAAGCACTCGGATTGCTGGAACTTTGGGATACATGGCACCAGAATATGCAATGCGAGGACACTTAACTGATAAGGCTGATGTTTATAGCTTTGGTGTCGTGGCTTTAGAAATAGTTAGTGGAAGGAGCAACACTACTTTCTGGACAGATAACGACTCCTCTTATCTTCTAGACTCGGCACTGAAGTTGAAAGAGAAGAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAACTTCAATAAGCGAGAGGCATTGAGAATGATCAAAATTGCTCTCCACTGCACTAATGGCTCTCCTGCAGCAAGACCTAACATGTCATCAGTAGTGAGCATGCTAGAAGGAAAGCAGGCCATTGAGGACATAGTGTCAGATTCAAGTGTCACTCAAGAAGCAATAAATGCAGCATGGACTCATTTGTTGCAGGACGCCGAGCGATCTAAGAACTCGGCAACAGGTTCTTCAACATCTGCAAGCGATCTCTATCCAATCAACATATCTCAGTACTTGAATATTAGAGATACTAGACTATGA 2973 42.01 MVGIHSQSTRLPAEEVEALQEIGKVLGKRDWNFSADPCSGDHGWISQPNQIPKNVSGFENNLTCDCTFLNATVCHVISIVLKSQSLQGTLPPHLVRLPFLQQIDLTRNYLSGQIPPEWGSSNLVNISLLGNRLTGLIPEEIGNITTLENLVLEINQLSGSIPQALGNLPQIQRIHLTSNNFSGELPTSLGKLTTLKEFRIGDNNFSGPIPNFIRNWTDLTELFIQASGLSGPIPSDIGLLTKLSDLRISDLTGASSPFPPLSNLEDMTILILRSCNITGRLPNYLDRMPSLKILDLSFNKLSGRIPTRFNALKGLDNMFLTGNMLNGSVPDWMLKGNGIDLSYNNFTVRVAGESCRSRKVNLFASSSQDNDYGILSCLAGSSCSKSWYSLHINCGGKEQTINGTTVFKGDRNTGSSMFFVTGTNWAIINTGSFLDDGSSQDEYTATNSSTLSMTNPELYMTARISPLSVTYYGFCMGNGNYTVSLHFAEIMFTDDKSFSSLGRRIFDVYIQKKLVLENFNIVDAAGGVGKAVIKKIPVTVTNGTLEIRFYWAGKGTNAIPVRGVYGPLISAISVDPDFEPPEEGGGTGKSGITVGAVIGIAAAAIFVILLVLGILWWSICLRREKTLEQELRGLDLQTCSFTLRQIKAATNNFDAANKIGEGGFGPVYKGVLADGTAIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLAHALFGQEESKLQLELDWSTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGNTHISTRIAGTLGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTTFWTDNDSSYLLDSALKLKEKNSLMELVDPRLGSNFNKREALRMIKIALHCTNGSPAARPNMSSVVSMLEGKQAIEDIVSDSSVTQEAINAAWTHLLQDAERSKNSATGSSTSASDLYPINISQYLNIRDTRL 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9079483 9088754 - Lag0037779.1 Lac2g1141 598405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1141 990 Gene3D Ribonuclease Inhibitor 193 361 IPR032675 -
Lac2g1141 990 Gene3D Phosphorylase Kinase; domain 1 618 728 - -
Lac2g1141 990 Pfam Protein tyrosine and serine/threonine kinase 656 926 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1141 990 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 27 941 IPR051824 -
Lac2g1141 990 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515(InterPro)
Lac2g1141 990 Pfam Leucine Rich Repeat 290 310 IPR001611 GO:0005515(InterPro)
Lac2g1141 990 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
Lac2g1141 990 CDD STKc_IRAK 659 928 - -
Lac2g1141 990 ProSiteProfiles Protein kinase domain profile. 653 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1141 990 Pfam Malectin domain 389 572 IPR021720 -
Lac2g1141 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 387 577 - -
Lac2g1141 990 Gene3D Transferase(Phosphotransferase) domain 1 729 947 - -
Lac2g1141 990 SUPERFAMILY Protein kinase-like (PK-like) 638 928 IPR011009 -
Lac2g1141 990 FunFam Putative LRR receptor-like serine/threonine-protein kinase 729 938 - -
Lac2g1141 990 Gene3D - 387 576 - -
Lac2g1141 990 SMART serkin_6 653 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1141 990 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 622 728 - -
Lac2g1141 990 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 12 252 - -
Lac2g1141 990 SUPERFAMILY L domain-like 59 333 - -
Lac2g1141 990 Gene3D Ribonuclease Inhibitor 42 188 IPR032675 -
Lac2g1141 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0993 Lac-Chr10:7965531 Lac2g1141 Lac-Chr2:9079483 1.20E-229 dispersed
Lac12g0054 Lac-Chr12:648371 Lac2g1141 Lac-Chr2:9079483 5.50E-148 dispersed
Lac2g1141 Lac-Chr2:9079483 Lac2g1158 Lac-Chr2:9264824 0.00E+00 dispersed
Lac2g1141 Lac-Chr2:9079483 Lac2g1142 Lac-Chr2:9093497 2.20E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86004 PF07714 PK_Tyr_Ser-Thr 2.60E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1141 - - - 0.0