Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1142 ATGGATATATCATCACAAAAAATTATTAAAGTGTTCCTAGGAGAGGGATATATATCACATCACCGACCAAAAATTTTATGCAATGAGTGTCCCTTTTCTCTTGATGCAGTTTCTCGATCAGAAGGTCAAAATACGTTACCTGTAGGGGCAGTTGTTGGAAGTGTGGTTGCAGTGGTCTTCATTATAATTTTGGTTCTCGGAACTTTGTGGTGGAAAGGCTATCTTCGAAGGAAAAATACACATCAGCAAGATCTAAAGGGTCAAAATCTGCCCATTGCCGGTTCATTTACATTAAAGCAAATCACAACCGCAACAAATAACTTCAACACTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGCATTCTTATGGATGGTACGATGATTGCAGTGAAGCAACTTTCTACGAAGTCAAAGCAAGGAAACCGTGAATTTGTGAATGAAATAGGCTTGATATCCTCTTTGAATCACCCAAATCTAGTTAAGCTTTATGGATGTTGTACTGAAGCAGACCAACTTTTACTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTCGGACCTCAAGGATGTCGATTAAAATTGGATTGGACAACAAGACAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGTTTTTCTTCATGAGGAGTCAAGATTGAAGATTGTTCACCGAGATATCAAAGGTACTAATGTATTGTTAGATAAGAATCTCAACCCAAAGATATCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACACTTGGGTATATGGCACCAGAATATGCAACACGAGGCTACTTAACCGATAAAGCAGATGTTTATAGTTTTGGTATCGTGGCATTGGAAATAGTTAGTGGAAGGAGCAACACTATGTACCGAGGAAAGGATAAGTGTCTTTATCTTCTCGATTGGGCACTTGTGTTGAAAGAGAAAGGGAGTTTAATGGAGCTAGTTGATCCAAAGTTGGGCTCCAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTCCTTTGCACCAATGTCTCTCCCTCGGCGAGACCTACCATGTCCTTCGTGGTGAGCATGTTGGAAGGTAAGGTTCCTATCAAGGAGTTGGTTGCAGATCCAGATCCAGATGACGTGGTAAAAGAGATGAGCGCAATGTGGAGCCTTATTCAACAAAGCGAGATAATACCCGACGACGAGAACAAGATTGAGACTGCATCGTTTCTAGAGATGCGATCAACCAGTTTTTCGACATCGATGAAGAGTAGAAACTAG 1329 40.33 MDISSQKIIKVFLGEGYISHHRPKILCNECPFSLDAVSRSEGQNTLPVGAVVGSVVAVVFIIILVLGTLWWKGYLRRKNTHQQDLKGQNLPIAGSFTLKQITTATNNFNTSNKIGEGGFGPVYKGILMDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPNLVKLYGCCTEADQLLLVYEYMENNSLAQALFGPQGCRLKLDWTTRQKICIGIAKGLVFLHEESRLKIVHRDIKGTNVLLDKNLNPKISDFGLAKLDEEENTHISTRIAGTLGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMYRGKDKCLYLLDWALVLKEKGSLMELVDPKLGSSFDQEEAMAMINIAFLCTNVSPSARPTMSFVVSMLEGKVPIKELVADPDPDDVVKEMSAMWSLIQQSEIIPDDENKIETASFLEMRSTSFSTSMKSRN 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9093497 9096067 - Lag0037780.1 Lac2g1142 598406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1142 442 SUPERFAMILY Protein kinase-like (PK-like) 91 380 IPR011009 -
Lac2g1142 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1142 442 Gene3D Transferase(Phosphotransferase) domain 1 184 391 - -
Lac2g1142 442 SMART serkin_6 108 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1142 442 Gene3D Phosphorylase Kinase; domain 1 71 183 - -
Lac2g1142 442 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 43 397 IPR051824 -
Lac2g1142 442 FunFam Putative LRR receptor-like serine/threonine-protein kinase 184 391 - -
Lac2g1142 442 CDD STKc_IRAK 114 381 - -
Lac2g1142 442 Pfam Protein kinase domain 109 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1142 442 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 76 183 - -
Lac2g1142 442 ProSiteProfiles Protein kinase domain profile. 108 389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1142 Lac-Chr2:9093497 Lac2g2648 Lac-Chr2:40772503 4.90E-217 dispersed
Lac2g1141 Lac-Chr2:9079483 Lac2g1142 Lac-Chr2:9093497 2.20E-140 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86005 PF00069 Pkinase 2.80E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1142 - - - 0.0