Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1145 ATGGAGCAATTGCCTCCACATCGGCAAAGACCACAAGTGCACGAAGGACGTTCGGTCGTATGTCCATATAAATTGTGGTGGAAGGAAGTAACCATCGATGGTGTCAAGTTTGAAGGAGATGAAGATAGGCTCAACTCCTCACAGTTTTCCTCAAGTAAAACAAATTGGGCATTGAGCAATACTGGCGTTTTTATGGATGACGATACTACAAATGACTACATAATTGCTAAGAATTTCTCTGTCTTGTTTATGACAAATTCGAGAGTACTGTATGAGACAGCTCGAATTTCTCCACTGTCTCTTACATACTATGTGTATTGCATGGCAACTGGAAACTACACGATAAGTCTCCATTTTGCAGAAATAATGTTTACCAATGATAAAGATTATGGCAGCCTTGGAAGACGCATTTTTGATGTTTATGTGCAGGGAAAGCGAGTGTTGAAGGACTTTAATATTGTAGATTCTGCAGGTGGTGCTGGTAAAGCTGTCATAAAAAAGATTCCTGTTGCTATTAGTAGTAGTGGTACTTTGGAGATACGATTTCATTGGGCTGGCAAGGGGACAGTGGTCATCCCTATATTTGGAGTCCATGGTCCTTTGATTTCTGCGATTTCAGTAGATCCACATCCTGATGCAGTTTCTCCATCAGAAGAAGGTCGAAATACATTACCTGTAGGTGCAGTTGTTGGAATTTTGGTAGCAGTGGTCTTCATTATAATTTTGGTTCTCGGAATTTTGTGGTGGAGAGGCTATCTTGGAAGGAAAAATGCACATCACCAAGATCATGTGAAGGGTCAAAATCTGCCAATTGGTTCATTTACATTAAAGCAAATCACAACTGCAACAAATAACTTTGACCCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTTTGGATGGTACCATGATTGCAGTGAAGCAACTTTCTACAAAGTCAAAGCAAGGAAACCGTGAATTTGTGAATGAGATAGGCTTGATATCTTCTTTGAATCACCCACATTTAGTTAAGCTTTATGGATGTTGTATCGAAGCAGATCAGCTTTTACTAGTATATGAATATATGGAAAATAATAACCTTGCTCAAGCCCTCTTTGGACCTCAAGGATGTCAGCTAAAATTGGATTGGGCAACAAGACAAAAGATTTGTATTGGTATAGCCAAAGGTTTGGCTTTTCTTCACGAGGAGTCAAGATTGAAGATAGTTCACCGAGATATCAAAGGTTCTAACATATTGTTAGATAAAAATCTCAATCCGAAGATATCTGACTTTGGTTTGGCTAAACTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACATTTGGATATATGGCACCAGAATATGCAACACGAGGCTACTTAACCGATAAAGCTGATGTTTACAGCTTTGGTATTGTGGCATTAGAAATAGTTAGTGGAAGGAGCAACACTATGTACCGAGGGAAGGATAAGTGTCTTTATCTCATTGATTGGGCACTTGTATTGAAGGAGAAAGGAAGTTTGATGGAGCTAGTGGATCCAAAGTTGGGGTCCGACTTCGACCAAGAAGAGGCAATGGCAATGATCAATATTGCTTTTCTTTGCACCAACGTCTCTCCCTCAGCGAGACCTACCATGTCCTCCGTGGTGAGCATGTTGGAAGGTAAAGTTGGTGTGAAGGAGGTGGACGTTCAAGATGCAGATGCAGATGACAATGACACGGTAGAAGAGATGAGCGCAATGTGGGCTCTTATTCAGCAGCAGGACGAAATAGCCAACGAGGAGCACAAGACAAAAAGTGCATCACTTATGGACATAGGATCTACCAGTTCTTCGACATCAGCATCAATTAGACGATAA 1872 40.54 MEQLPPHRQRPQVHEGRSVVCPYKLWWKEVTIDGVKFEGDEDRLNSSQFSSSKTNWALSNTGVFMDDDTTNDYIIAKNFSVLFMTNSRVLYETARISPLSLTYYVYCMATGNYTISLHFAEIMFTNDKDYGSLGRRIFDVYVQGKRVLKDFNIVDSAGGAGKAVIKKIPVAISSSGTLEIRFHWAGKGTVVIPIFGVHGPLISAISVDPHPDAVSPSEEGRNTLPVGAVVGILVAVVFIIILVLGILWWRGYLGRKNAHHQDHVKGQNLPIGSFTLKQITTATNNFDPSNKIGEGGFGPVYKGILLDGTMIAVKQLSTKSKQGNREFVNEIGLISSLNHPHLVKLYGCCIEADQLLLVYEYMENNNLAQALFGPQGCQLKLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGSNILLDKNLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTMYRGKDKCLYLIDWALVLKEKGSLMELVDPKLGSDFDQEEAMAMINIAFLCTNVSPSARPTMSSVVSMLEGKVGVKEVDVQDADADDNDTVEEMSAMWALIQQQDEIANEEHKTKSASLMDIGSTSSSTSASIRR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9130684 9134767 - Lag0037783.1 Lac2g1145 598409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1145 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 362 569 - -
Lac2g1145 623 Pfam Malectin domain 31 205 IPR021720 -
Lac2g1145 623 Gene3D Phosphorylase Kinase; domain 1 251 361 - -
Lac2g1145 623 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 48 573 IPR051824 -
Lac2g1145 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1145 623 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 255 361 - -
Lac2g1145 623 Pfam Protein kinase domain 289 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1145 623 MobiDBLite consensus disorder prediction 597 623 - -
Lac2g1145 623 Gene3D Transferase(Phosphotransferase) domain 1 362 584 - -
Lac2g1145 623 MobiDBLite consensus disorder prediction 606 623 - -
Lac2g1145 623 ProSiteProfiles Protein kinase domain profile. 286 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1145 623 SUPERFAMILY Protein kinase-like (PK-like) 267 558 IPR011009 -
Lac2g1145 623 CDD STKc_IRAK 292 559 - -
Lac2g1145 623 Gene3D - 28 209 - -
Lac2g1145 623 SMART serkin_6 286 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1145 623 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 27 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1145 Lac-Chr2:9130684 Lac2g1149 Lac-Chr2:9169844 1.90E-230 dispersed
Lac2g1143 Lac-Chr2:9105472 Lac2g1145 Lac-Chr2:9130684 1.80E-73 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86006 PF00069 Pkinase 2.10E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1145 - - - 0.0