Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac2g1149 ATGTTGGAAGTTAGAAAAAGAATCATTATTGTGGCTGCCATTGTTGTTTCTTCGGTTCTAAGCCTTGCTTTTGGATCTCCTGTATTGCCTCTTGAGGAAGTTGAAGGTTTAAGGTATGTGGCAGAGAGATTGGGAAAGAAAGATTGGAATTTTAGTGCAGATCCATGCAGCCCACAGTTTGGTCGGATGTCTCAAAGTCAAAGCTACGACATTCAAGATGTTCGGAGGCGATCCATGGCTGAATCGAGTGGAACCGGGGAGGATAGGGGCAACAGAGATCGAACGGAGGCGCAAGTGGGTCGAGTAGTCGGCCTCGGCCTCGGGCTGAGGCCAACCATATGGGTTGGGCCAAGGCCCAATCCCTCTGGCCTGTTCCGTGGTTGTCTCATTAGACTGTACAGAATTCTGAAGTCGCAGAGTTTGGCAGGGACACTTCCATCTCAGCTCTTCAAGTTGCCCTTCCTTCAGGAACTCGATCTCTCTCGAAACTATCTCAGCGGCCAAATTCCTCCAGAATGGGCCTCCACAAAGCTCCTCAACATTTCCTTGCTTGGAAATCGGCTCACGGGCTCCATTCCACCCGACATTGGAAACATCTCTACTCTTACAACCTTGGTCTTGGAAGCCAATCATCTATCGGGAACTTTACCTTCAACACTTGGAAATTTGTTCAACTTGGAAAAATTACTTCTTGCCTCCAATAACTTAACTGGGCAGTTGCCGACATCTCTAGGAATGCTGACCTCATTGATCTCATTTCGAATCAGTGACAATAACTTTGAAGGACAAATACCAAGTTTCATTCAGAATTGGATAAACGTTGAGAAAATAAAGATTCAAGCAAGTGGGTTGAGTGGGCCTCTTCCTTCTGAATTGGGACTTTTGACCAAATTAACCGATCTAAGAATCAGTGACTTGAACGGAGCTTCATCGTCACCCTTTCCACCTCTAAATAATTTGACCAATATCAGATTTCTGATATTAAGAAGTTGCAATATCGTGGGATTATTGCCCGATTATCTAGATGGGATGAAATCTTTGGAACTCTTAGACCTCAGCTTTAACAAAATAAGTGGGCAGATCCCTACAAGTTTCCATTCTCTTGATGATGTTGATAATATATTTTTAACTGGAAACTTGCTCAATGGTTCGGTGCCTGAATGGATGTTGCTCAGAGGAAATAGCATTGATCTCTCTTACAATAAATTTAACCCACTATCTACAGGCTGCCAATCACGAGATACAAATCTATTTGCAAGCTCTGCATTAGACAATAATAGTTCCAATCTTGTTTCTTGTTTGCCAGACCGCATTTGTTCTGATGAGAATGTATATAGTCTCCATATAAATTGTGGTGGCAAAGAAGAAGTTATCAATGATACAAAGTTCGAAGGAGATGAAGACACAGGCAAGCCGTCTGTGTTTGTCTCAAGCACAAAAAATTGGGCATTTAGCAACACTGGAATATTTATAGAGGATACTCGTCTTTCATTCGACTATATTGAACTAAATTCATCAGAGCTTCATATGATAAATAATTCCAAACTATATGAGAATGCTCGCATTTCTCCAATATCACTTACATATTATGTGTACTGTATGGCAAATGGAAACTATACCATAAGCCTCCATTTTGCTGAAATTAGATTTACAAATGGTCAAACTTTTAGCAGCCTTGGAAGACGCATTTTTGATGTCTATGTGCAGGGACGGCTGGTACTGAAGGATTTCAATATTGTAGATGCTGCAGGTGGTGCTGGTAAAGCTGTAATCAAAAAGATTTTCACTGCTGTTACTAGTAATACCATAGAGATTCGTTTTTACTGGGCTGGAAAGGGAACATCTGCAATCCCTGTGGGTGGAGTCTATGGCCCTTTGATATCCGCCATTTCGATAGAACCCGACTTCGAGCCTCCATCAGAAGGTCGAAGTCGTTTACCAGTAGGTGCAATACTTGGCATTGTGGCTGCAGTCACCATTGTTATAGTCTCAATTCTTGGAATTCTATGGTGGAGAGGTTGCCTTGGACGAAAAAGTACACTTCATCAAGATCTCAAAGGTCTAGATTTGCAAACTGGTTCATTCACATTAAGGCAAATCAAAGCTGCCACAAATAACTTTGATGTTTCTAATAAGATTGGAGAAGGTGGTTTTGGTCCTGTTTATAAGGGTTTTCTCTTGGACGGCACCATTATCGCAGTGAAGCAACTTTCCTCTAAGTCAAAGCAAGGAATGCACGAGTTTGTGAATGAGATAGGCATGATATCCGCTTTGCATCATCCACATCTAGTTAAGCTTTATGGATGTTGTGTCGAAGAAAATCAACTTTTGGTAGTATACGAATATATGGAAAATAATAGCCTCGCTCAGGCTATGTTTGGACCTGAAGCAAGTCAATTGAAATTAGATTGGCCAACCAGGCAGAAAATTTGTATTGGTATAGCCAAAGGTTTGGCCTATCTTCATGAGGAATCGAGATTGAAGATTGTTCACAGAGATATCAAAGCAACTAATGTATTATTAGATAAAAATCTCAACCCCAAGATATCCGACTTTGGTCTTGCCAAACTTGAAGAAGAAGGAAATACTCACATAAGCACTCGAATTGCTGGAACTTTTGGTTATATTGCACCAGAGTATGCAATGCGAGGCTACTTAACTGATAAAGCAGATGTATATAGTTTTGGCATCGTGGCCTTGGAAATAGTTAGTGGAAGGAGCAATACTACTTATCGATCAAAAGACGACTACTTTTATCTACTTGATTGGGCACTTGAATTAAAAGAAAAAGACAGTTTAATGGAGCTAGTTGATCCAAGGCTAGGGTCCAACTTCAACAAGAAAGAGGCAATGGGTATGATCAACATTGGTCTTCATTGCACAAATGTTTCTCCAACAGAAAGGCCTACCATGTCTTTAGTGGTGGCCATGTTGGAAGGCAAGGTTGCAGTGAAGGAGTTGGTTTCACATCCAAATGAATCAAGAACAAAGATGGGTGAAATGTGGACCATTTTGGAGCAGAGCTTGAAACAAACTGACAATGAGAGTCAACTGGCAGAGGAGATCTCTATGGACATGCCTTGTACCAATTCTTCAACATCAATGAGTTCAACTCTGAAACAATATCTGCAAGTTAGGTCTTGA 3144 41.16 MLEVRKRIIIVAAIVVSSVLSLAFGSPVLPLEEVEGLRYVAERLGKKDWNFSADPCSPQFGRMSQSQSYDIQDVRRRSMAESSGTGEDRGNRDRTEAQVGRVVGLGLGLRPTIWVGPRPNPSGLFRGCLIRLYRILKSQSLAGTLPSQLFKLPFLQELDLSRNYLSGQIPPEWASTKLLNISLLGNRLTGSIPPDIGNISTLTTLVLEANHLSGTLPSTLGNLFNLEKLLLASNNLTGQLPTSLGMLTSLISFRISDNNFEGQIPSFIQNWINVEKIKIQASGLSGPLPSELGLLTKLTDLRISDLNGASSSPFPPLNNLTNIRFLILRSCNIVGLLPDYLDGMKSLELLDLSFNKISGQIPTSFHSLDDVDNIFLTGNLLNGSVPEWMLLRGNSIDLSYNKFNPLSTGCQSRDTNLFASSALDNNSSNLVSCLPDRICSDENVYSLHINCGGKEEVINDTKFEGDEDTGKPSVFVSSTKNWAFSNTGIFIEDTRLSFDYIELNSSELHMINNSKLYENARISPISLTYYVYCMANGNYTISLHFAEIRFTNGQTFSSLGRRIFDVYVQGRLVLKDFNIVDAAGGAGKAVIKKIFTAVTSNTIEIRFYWAGKGTSAIPVGGVYGPLISAISIEPDFEPPSEGRSRLPVGAILGIVAAVTIVIVSILGILWWRGCLGRKSTLHQDLKGLDLQTGSFTLRQIKAATNNFDVSNKIGEGGFGPVYKGFLLDGTIIAVKQLSSKSKQGMHEFVNEIGMISALHHPHLVKLYGCCVEENQLLVVYEYMENNSLAQAMFGPEASQLKLDWPTRQKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLEEEGNTHISTRIAGTFGYIAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTTYRSKDDYFYLLDWALELKEKDSLMELVDPRLGSNFNKKEAMGMINIGLHCTNVSPTERPTMSLVVAMLEGKVAVKELVSHPNESRTKMGEMWTILEQSLKQTDNESQLAEEISMDMPCTNSSTSMSSTLKQYLQVRS 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9169844 9181645 - Lag0037787.1 Lac2g1149 598413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac2g1149 1047 MobiDBLite consensus disorder prediction 74 95 - -
Lac2g1149 1047 Pfam Malectin domain 446 630 IPR021720 -
Lac2g1149 1047 FunFam Leucine-rich repeat receptor protein kinase EMS1 173 266 - -
Lac2g1149 1047 SMART serkin_6 707 978 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1149 1047 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1149 1047 Gene3D Transferase(Phosphotransferase) domain 1 783 997 - -
Lac2g1149 1047 FunFam Putative LRR receptor-like serine/threonine-protein kinase 783 990 - -
Lac2g1149 1047 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 444 635 - -
Lac2g1149 1047 CDD STKc_IRAK 713 980 - -
Lac2g1149 1047 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 994 IPR051824 -
Lac2g1149 1047 SUPERFAMILY Protein kinase-like (PK-like) 691 997 IPR011009 -
Lac2g1149 1047 Gene3D Ribonuclease Inhibitor 309 420 IPR032675 -
Lac2g1149 1047 MobiDBLite consensus disorder prediction 58 73 - -
Lac2g1149 1047 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515(InterPro)
Lac2g1149 1047 Pfam Protein tyrosine and serine/threonine kinase 709 977 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac2g1149 1047 SUPERFAMILY L domain-like 138 419 - -
Lac2g1149 1047 MobiDBLite consensus disorder prediction 58 95 - -
Lac2g1149 1047 Gene3D Phosphorylase Kinase; domain 1 676 782 - -
Lac2g1149 1047 ProSiteProfiles Protein kinase domain profile. 707 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac2g1149 1047 Pfam Leucine Rich Repeat 202 223 IPR001611 GO:0005515(InterPro)
Lac2g1149 1047 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515(InterPro)
Lac2g1149 1047 Pfam Leucine Rich Repeat 155 174 IPR001611 GO:0005515(InterPro)
Lac2g1149 1047 Pfam Leucine Rich Repeat 225 246 IPR001611 GO:0005515(InterPro)
Lac2g1149 1047 Gene3D Ribonuclease Inhibitor 43 308 IPR032675 -
Lac2g1149 1047 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 676 782 - -
Lac2g1149 1047 Gene3D - 442 634 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g1143 Lac-Chr2:9105472 Lac2g1149 Lac-Chr2:9169844 8.30E-143 dispersed
Lac2g1145 Lac-Chr2:9130684 Lac2g1149 Lac-Chr2:9169844 1.90E-230 dispersed
Lac2g1149 Lac-Chr2:9169844 Lac2g1158 Lac-Chr2:9264824 1.10E-299 dispersed
Lac2g1146 Lac-Chr2:9140465 Lac2g1149 Lac-Chr2:9169844 4.20E-15 proximal
Lac2g1149 Lac-Chr2:9169844 Lac2g1150 Lac-Chr2:9184255 6.40E-284 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86007 PF07714 PK_Tyr_Ser-Thr 4.10E-47 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac2g1149 - - - 0.0